Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,832,165 – 9,832,265 |
Length | 100 |
Max. P | 0.625752 |
Location | 9,832,165 – 9,832,265 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 80.25 |
Mean single sequence MFE | -29.66 |
Consensus MFE | -19.94 |
Energy contribution | -19.44 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.28 |
Mean z-score | -1.41 |
Structure conservation index | 0.67 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625752 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9832165 100 - 22407834 CGUCG------GCGGCUUUGGCGCUGAA-AUUGAAUUUGCCAGCGACUGAGCCGCAAACGCUGAAACCGCGAUCAAAAUCUAGCCACGC--AUACA--GUCGCAGUCGAAU ..(((------(((((((...(((((.(-(......))..)))))...)))))))...(((.......)))...........((.((..--.....--)).))...))).. ( -29.20) >DroPse_CAF1 42895 89 - 1 CGUCG------GCGGCUUUGGUGCUGAA-AUUGAAUUUUCCAACGUCGGGGCCGCAAACGCAAAAACCGCGAUCAAAAUCUAUGCACGC--ACACA--CA----------- .((((------(((((((((..(..(((-(......))))...)..)))))))))...(((.......)))...............)).--))...--..----------- ( -24.10) >DroEre_CAF1 43317 104 - 1 UGUCGGCGUUGGCGGCUUUGGCGCUGAA-AUUGAAUUUGCCAGUGACUGGGCCGCAAACGCUGAAACCGCGAUCAAAAUCUAGCCACGC--AUACA--GUCGCA--CGAAU ..((((((((.(((((((...(((((.(-(......))..)))))...))))))).))))))))....(((((................--.....--))))).--..... ( -36.20) >DroYak_CAF1 42772 100 - 1 CGUCG------GCGGCUUUGGCGCUGAA-AUUGAAUUUGCCAGCGACUGAGCCGCAAACUCUGAAACCGCGAUCAAAAUCUAGCCACGC--AUACAGAGUCGCA--CGAAU (((((------(((((((...(((((.(-(......))..)))))...)))))))..((((((.....(((...............)))--...)))))))).)--))... ( -32.86) >DroAna_CAF1 40999 93 - 1 CGUCG------GCGGCUUUGGUGCUGAAAAUUGAAUUUGCCAGUGACGAAGCCGCAAACGCUGAAACCGCGAUCAAAAUCUAUGUGCGUGGAUACA------------CAU (((..------(((((((((..((((..((......))..))))..)))))))))..)))......(((((..((.......))..))))).....------------... ( -31.50) >DroPer_CAF1 43448 89 - 1 CGUCG------GCGGCUUUGGUGCUGAA-AUUGAAUUUUCCAACGUCGGGGCCGCAAACGCAAAAACCGCGAUCAAAAUCUAUGCACGC--ACACA--CA----------- .((((------(((((((((..(..(((-(......))))...)..)))))))))...(((.......)))...............)).--))...--..----------- ( -24.10) >consensus CGUCG______GCGGCUUUGGCGCUGAA_AUUGAAUUUGCCAGCGACGGAGCCGCAAACGCUGAAACCGCGAUCAAAAUCUAGCCACGC__AUACA__GU________AAU (((........((((((..(.(((((..............))))).)..))))))...(((.......)))..............)))....................... (-19.94 = -19.44 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:25 2006