Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,828,589 – 9,828,680 |
Length | 91 |
Max. P | 0.865072 |
Location | 9,828,589 – 9,828,680 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 82.77 |
Mean single sequence MFE | -24.33 |
Consensus MFE | -17.61 |
Energy contribution | -19.00 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.13 |
Mean z-score | -2.73 |
Structure conservation index | 0.72 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.865072 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9828589 91 - 22407834 UUAGAUUAUUUUUAUGUGCU-----------------C--UUAUUUUCGCAUGCCUAAGUAGUUAGUUUAAUAAAUUGCAUUGCUUAGGUAAGCGCCGUUGAGCGGCAGA ................((((-----------------(--(((....(((.(((((((((((((((((.....))))).)))))))))))).)))....)))).)))).. ( -27.40) >DroSec_CAF1 36953 89 - 1 UUAGAUUAUUUUUAUGUGC---------------------UUAUUUUCGCAUGCCUAAGUAGUUAGUUUAAUAAAUUGCAUUGCUUAGGUAAGCGCCGUUGAGCGGCAGA ..............(((((---------------------(((....(((.(((((((((((((((((.....))))).)))))))))))).)))....))))).))).. ( -27.80) >DroSim_CAF1 40233 89 - 1 UUAGAUUAUUUUUAUGUGC---------------------UUAUUUUCGCAUGCCUAAGUAGUUAGUUUAAUAAAUUGCAUUGCUUAGGUAAGCGCCGUUGAGCGGCAGA ..............(((((---------------------(((....(((.(((((((((((((((((.....))))).)))))))))))).)))....))))).))).. ( -27.80) >DroEre_CAF1 39661 89 - 1 UUGGAUUAUUUUUAUGUGC---------------------UUAUUUUCGCAUGCCUAAGUAGUUAGUUUAAUAAAUUGCAUUGCUUAGGUAAGCGCCGUUGAGUGGCAGG ..............(((((---------------------(((....(((.(((((((((((((((((.....))))).)))))))))))).)))....))))).))).. ( -25.20) >DroYak_CAF1 38091 79 - 1 UUAGAUUAUUUUUAUGUGC---------------------UUAUUUUCGCAUGCCUAAGUAGUUAGUUUAAUAAAUUGCAUUGCUUAGGUAAGCGCCGUU---------- ...................---------------------.......(((.(((((((((((((((((.....))))).)))))))))))).))).....---------- ( -20.00) >DroPer_CAF1 39740 107 - 1 UUAGAUUAUUUUUAUGUGUGUUGUGUUUUCCUUGUGCCUUGUAUUUUCGCAUGCUUAAGUAGUUAGUUUAAUAAAUUGCAUUGCCUAGUAAGAGGCGGAUGAGGUGA--- .............................(((..((((((.((((...((((((.....(((.....))).......))).)))..)))).)))))..)..)))...--- ( -17.80) >consensus UUAGAUUAUUUUUAUGUGC_____________________UUAUUUUCGCAUGCCUAAGUAGUUAGUUUAAUAAAUUGCAUUGCUUAGGUAAGCGCCGUUGAGCGGCAGA ................................................((.(((((((((((((((((.....))))).)))))))))))).))((((.....))))... (-17.61 = -19.00 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:21 2006