| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,825,884 – 9,825,991 |
| Length | 107 |
| Max. P | 0.638714 |
| Location | 9,825,884 – 9,825,991 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 73.32 |
| Mean single sequence MFE | -31.75 |
| Consensus MFE | -11.24 |
| Energy contribution | -11.43 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.35 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638714 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9825884 107 + 22407834 UUAUUGGCAGUUGG-UCGACGGAGCAGUUGCGUUGC-CUCAUUACGGGCAAAAACCAUUAUAAAAAUGGCAUGUUCGCUGGCAGCCUGAUGAGUUUGUGGG-CGACCAAU .........(((((-((....(((((..(((.((((-((......))))))....((((.....))))))))))))(((.((((.((....)).)))).))-)))))))) ( -34.40) >DroPse_CAF1 36682 100 + 1 UUAUUGGCAGUUCGGUCGAAUGGCCCGCU------G-CUCAUUACGGG-AAAAGCCAUUACAAAAAUGGCUUAUACUUUGGCAGCGUGAUGAGUUUUUG-G-CGGCCAGU ..((((((.....((((....))))((((------(-(((((((((..-..((((((((.....))))))))...((.....))))))))))))....)-)-)))))))) ( -37.10) >DroEre_CAF1 37048 90 + 1 UUAUUGGCAGUUGG-----------------GUUGC-CUCAUUACCGGGA-AAAUCAUUAUAAAAAUGGCAUGUACUUUGGCAGCGUGAUGAGUUUUUGGG-CUCCCAAU ..(((((.((((.(-----------------(..((-.(((((((.....-....((((.....))))((.(((......))))))))))))))..)).))-)).))))) ( -22.20) >DroYak_CAF1 35308 91 + 1 UUAUUGGCAGUUGG-----------------GCCGUGCUCAUUACGUGGA-AAAUCAUUAUAAAAAUGGCGUGUACUCUGGCAGCGUGAUGAGUUUUUGGG-CGCCCAAU .........(((((-----------------(((.((((((((((((...-...(((((.....)))))..(((......))))))))))))))....).)-.))))))) ( -26.70) >DroAna_CAF1 34453 107 + 1 UUAUUGGCAGUUGG-GCAGAGUGGCAGAA-UGGCGG-CUCAUUACGGCGAAAGGCCAUUAAAAAAAUGGCAUGUUCUCGGUUGGCGUGAUGAGUUUUUCGGCCAACCAAU .........((((.-...((((.((....-..)).)-)))....))))(((..((((((.....))))))...)))..(((((((.(((........))))))))))... ( -37.00) >DroPer_CAF1 37223 88 + 1 UUAUUGGCAGUUCGGUC------------------G-CUCAUUACGGG-AAAAGCCAUUACAAAAAUGGCUUGUACUUUGGCAGCGUGAUGAGUUUUUG-G-CGGCCAGU ..((((((.((.(((..------------------(-(((((((((..-..((((((((.....))))))))((......))..))))))))))..)))-)-).)))))) ( -33.10) >consensus UUAUUGGCAGUUGG_UC______________G__GG_CUCAUUACGGGGAAAAACCAUUAUAAAAAUGGCAUGUACUCUGGCAGCGUGAUGAGUUUUUGGG_CGACCAAU .....................................(((((((((........(((((.....)))))..(((......))).)))))))))................. (-11.24 = -11.43 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:20 2006