| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,014,885 – 1,014,984 |
| Length | 99 |
| Max. P | 0.560029 |
| Location | 1,014,885 – 1,014,984 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 78.31 |
| Mean single sequence MFE | -41.88 |
| Consensus MFE | -22.69 |
| Energy contribution | -22.88 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.560029 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1014885 99 + 22407834 UCCCAGAUCAUCUGCCAAAAGUGGGCCAAGGUCGAUGGAAGUGGACCCUGGGCGGCCACAUAGGCGGGCGCACGUGGAUCGUGAUCGGUCUGAG----GAGA--G----- (((((((((.((((((....(((((((..((((.((....)).))))...)))..))))...))))))..((((.....))))...)))))).)----))..--.----- ( -41.40) >DroVir_CAF1 6777 108 + 1 UCCCAAAUCAUUUGCCAAAAGUGCGCCAACGUUGAGGGUAACGGACCCUGGGCAGCCACAUAAGCGGGUGCCCGGGGAUCGUGAUCGGUCUGAC--CGGGUAAAUAGAAA .......(((((((((.....(((.((........)))))((((.(((((((((.((.(....).)).))))))))).))))...(((.....)--))))))))).)).. ( -42.10) >DroGri_CAF1 8111 110 + 1 UCCCAAAUCAUUUGCCAGAAGUGCGCCAGUGUCGAGGGUAGCGGACCCUGGGCUGCCACAUAGGCGGGUGCCCGCGGAUCAUGAUCGGUCUGUUAUGAGGGAGAGAGAAG ((((....((((((((....(((.((....(((.(((((.....))))).))).)))))...))))))))...(((((((......))))))).....))))........ ( -39.80) >DroYak_CAF1 952 103 + 1 UCCCAGAUCAUCUGCCAGAAGUGGGCCAGGGUCGAUGGAAGUGGACCCUGGGCGGCCACAUAGGCGGGCGCACGUGGAUCGUGAUCGGUCUGCG----GGUAA-GAUC-- .....((((.((((((....((.(.((((((((.((....)).)))))))).).))......)))))).((.((..(((((....)))))..))----.))..-))))-- ( -46.80) >DroMoj_CAF1 8328 110 + 1 UCCCAAAUCAUUUGCCAAAAGUGCGCCAAGGUCGAGGGCAAAGGCCCCUGGGCUGCCACAUAGGCGGGUGCACGAGGAUCGUGAUCGGUCUGAUUGCGGAUUGAGAUCAA .......((((...((....(((((((..((((.(((((....).)))).))))(((.....))).)))))))..))...))))((((((((....))))))))...... ( -42.00) >DroAna_CAF1 7124 99 + 1 UCCCAGAUCAUCUGCCAAAAGUGGGCCAAGGUCGAGGGCAGCGGUCCCUGGGCGGCCACAUAAGCGGGCGCUCGAGGAUCGUGGUCGGUCUUUA--------A-AAAU-- ..((.(((((.(((((.....(.(((....))).).)))))((((((.((((((.((.(....).)).)))))).)))))))))))))......--------.-....-- ( -39.20) >consensus UCCCAAAUCAUCUGCCAAAAGUGCGCCAAGGUCGAGGGAAGCGGACCCUGGGCGGCCACAUAGGCGGGCGCACGAGGAUCGUGAUCGGUCUGAG____GGUAA_GAGA__ .(((((.....))(((....(((.((....(((.((((.......)))).))).)))))...)))))).......((((((....))))))................... (-22.69 = -22.88 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:25 2006