Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,817,409 – 9,817,503 |
Length | 94 |
Max. P | 0.523748 |
Location | 9,817,409 – 9,817,503 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 86.11 |
Mean single sequence MFE | -15.13 |
Consensus MFE | -11.35 |
Energy contribution | -11.68 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.83 |
Structure conservation index | 0.75 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523748 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9817409 94 - 22407834 AAUUUUCUACG----------------AGUGUCAUAAACUCCCCUUUGGCUACAACACUUCAACCAAAUGGUAAUAGUUAAUUUCAAACUAAAACUUGCCAUAAGAGGAU .(((((((..(----------------(((((..((..(........)..))..)))))).......((((((((((((.......)))))....))))))).))))))) ( -17.00) >DroSec_CAF1 26051 109 - 1 AAUUUUCUACCAACUUAACUUUAUGACAGUGUCAUAAACUCC-CUAUAGCUACAACACUUCAACCAAAUGGUAAUAGUUAAUUUCAAACUAAAACUUUCCAUAAGAGGAU ...................((((((((...))))))))....-..............((((.(((....)))..(((((.......))))).............)))).. ( -13.20) >DroSim_CAF1 29240 104 - 1 AAUUUUCUACCAACUUA-----GUGACAGUGUCAUAAACUCC-CUAUAGCUAAAACACUUCAACCAAAUGGUAAUAGUUAAUUUCAAACUAAAACUUGCCAUAAGAGGAU .(((((((.........-----.(((.(((((..........-...........)))))))).....((((((((((((.......)))))....))))))).))))))) ( -15.20) >consensus AAUUUUCUACCAACUUA______UGACAGUGUCAUAAACUCC_CUAUAGCUACAACACUUCAACCAAAUGGUAAUAGUUAAUUUCAAACUAAAACUUGCCAUAAGAGGAU .(((((((...................(((((......................)))))........((((((((((((.......)))))....))))))).))))))) (-11.35 = -11.68 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:15 2006