Locus 3385

Sequence ID 2L_DroMel_CAF1
Location 9,806,060 – 9,806,158
Length 98
Max. P 0.932117
window5355

overview

Window 5

Location 9,806,060 – 9,806,158
Length 98
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 90.30
Mean single sequence MFE -19.34
Consensus MFE -15.80
Energy contribution -15.76
Covariance contribution -0.04
Combinations/Pair 1.07
Mean z-score -1.88
Structure conservation index 0.82
SVM decision value 1.22
SVM RNA-class probability 0.932117
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9806060 98 - 22407834
UAACUGUUUUCUGUCUCACACCCGUACA--CACACUCCCGAAAGC-------CCGGAAACCCACACUCCGGAUAUCCGGAACACCUCCACACGAAUGAGGAAUGAUC
.........((..(((((....(((...--.......(((.....-------.)))..........(((((....)))))..........)))..)))))...)).. ( -17.90)
>DroSec_CAF1 14929 98 - 1
UAACUGUUUUCUGUCUCACACCCACACA--CACUCUCCCGAAAGC-------CCGGAAACCCACACUCCGGAUAUCCGGAACACCUCCACACGAAUGAGGAAUGAUC
.........((..(((((..........--.......(((.....-------.)))..........(((((....)))))...............)))))...)).. ( -16.80)
>DroSim_CAF1 18076 100 - 1
UAACUGUUUUCUGUCUCACACCCACACACACACUGUCCCGAAAGC-------CCGGAAACCCACACUCCGGAUAUCCGGAACACCUCCACACGAAUGAGGAAUGAUC
.........((..(((((...................(((.....-------.)))..........(((((....)))))...............)))))...)).. ( -16.80)
>DroEre_CAF1 17638 99 - 1
UAACUGUUUUCUGCCUCACACCCACACA--------CCCGAAAGCCGGAAACCCGGAAACCCACACUCCGGAUAUCCGGAACACCUCCACACGAAUGAGGAAUGAUC
.........((..(((((..........--------..(....)(((((...(((((.........)))))...)))))................)))))...)).. ( -23.60)
>DroYak_CAF1 15246 92 - 1
UAACUGUUUUCUGCCUCACACCCACACA--------CCCGAAAGC-------CCGGAAAUCCACACACCGGAUAUCCGGAACACCUCCACACGAAUGAGGAAUGAUC
.........((..(((((..........--------..(....).-------(((((.((((.......)))).)))))................)))))...)).. ( -21.60)
>consensus
UAACUGUUUUCUGUCUCACACCCACACA__CAC__UCCCGAAAGC_______CCGGAAACCCACACUCCGGAUAUCCGGAACACCUCCACACGAAUGAGGAAUGAUC
.........((..(((((...................(((.............)))..........(((((....)))))...............)))))...)).. (-15.80 = -15.76 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:08 2006