Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,802,332 – 9,802,452 |
Length | 120 |
Max. P | 0.824444 |
Location | 9,802,332 – 9,802,452 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.06 |
Mean single sequence MFE | -27.47 |
Consensus MFE | -24.68 |
Energy contribution | -24.85 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.42 |
Structure conservation index | 0.90 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.824444 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9802332 120 + 22407834 UUUAAAUGCAAUCGCUACCUAACAAGGGGAUUGCAUCAGAUACUUGGGGCAAUGUCUCAGCUACAAGGUUGAGAAACACUGUGAGCGAUAGAAGAAUUGUAACUCCUGAAACAAAAGAAU .....((((((((....(((....))).)))))))).......(..(((((.((((((((((....))))))))..)).)))..(((((......)))))....))..)........... ( -28.40) >DroGri_CAF1 12640 120 + 1 UUUAAAUGCAAUCGCUACCUAACAAGGGGAUUGCAUCAGAUACUUGGGGCAAUGUCUCAGCUACAAGGUUGAGAAACACUGUGAGCGAUAGAAGAAUUGUAACUCCUGAAACAAAAGAAU .....((((((((....(((....))).)))))))).......(..(((((.((((((((((....))))))))..)).)))..(((((......)))))....))..)........... ( -28.40) >DroSec_CAF1 11110 120 + 1 UUUAAAUGCAAUCGCUACCUAACAAGGGGAUUGCAUCAGAUACUUGGGGCAAUGUAUCAGCUACAAGGUUGAGAAACACUGUGAGCGAUAGAAGAAGAANNNNNNNNNNNNNNNNNNNNN .....((((((((....(((....))).))))))))..((((((((...))).))))).((((((..(((....)))..))).))).................................. ( -22.80) >DroSim_CAF1 14441 120 + 1 UUUAAAUGCAAUCGCUACCUAACAAGGGGAUUGCAUCAGAUACUUGGGGCAAUGUCUCAGCUACAAGGUUGAGAAACACUGUGAGCGAUAGAAGAAUUGUAACUCCUGAAACAAAAGAAU .....((((((((....(((....))).)))))))).......(..(((((.((((((((((....))))))))..)).)))..(((((......)))))....))..)........... ( -28.40) >DroEre_CAF1 13987 120 + 1 UUUAAAUGCAAUCGCUACCUAACAAGGGGAUUGCAUCAGAUACUUGGGGCAAUGUCUCAGCUACAAGGUUGAGAAACACUGUGAGCGAUAGAAGAAUUGUAACUCCUGAAACAAAAGAAU .....((((((((....(((....))).)))))))).......(..(((((.((((((((((....))))))))..)).)))..(((((......)))))....))..)........... ( -28.40) >DroWil_CAF1 16701 120 + 1 UUUAAAUGCAAUCGCUACCUAACAAGGGGAUUGCAUCAGAUACUUGGGGCAAUGUCUCAGCUACAAGGUUGAGAAACACUGUGAGCGAUAGAAGAAUUGUAACUCCUGAAACAAAAGAAU .....((((((((....(((....))).)))))))).......(..(((((.((((((((((....))))))))..)).)))..(((((......)))))....))..)........... ( -28.40) >consensus UUUAAAUGCAAUCGCUACCUAACAAGGGGAUUGCAUCAGAUACUUGGGGCAAUGUCUCAGCUACAAGGUUGAGAAACACUGUGAGCGAUAGAAGAAUUGUAACUCCUGAAACAAAAGAAU ..........((((((.(((....)))(((((((..(((....)))..))))).((((((((....))))))))....))...))))))............................... (-24.68 = -24.85 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:07 2006