| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,798,040 – 9,798,146 |
| Length | 106 |
| Max. P | 0.766566 |
| Location | 9,798,040 – 9,798,146 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 80.79 |
| Mean single sequence MFE | -26.29 |
| Consensus MFE | -18.37 |
| Energy contribution | -18.15 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.766566 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9798040 106 - 22407834 -CGUACUUCAUUCAUAACCAGAUCAAGUCCGUUUUCCUACAAUGGCUGCCCUGGAUCUUGCGAAUGGGUCGACCCGGUCGCAAGAUUACACGCAAAACAAUACUAUU -.(((............((((....((.(((((.......)))))))...))))(((((((((.((((....)))).)))))))))))).................. ( -30.20) >DroVir_CAF1 7981 99 - 1 -UAUUCUUUCG-------CAGAUCAAAUCCGUUUUCCUACAAUGGCUGCCCUGGAUAUUGCGCAUGGGUCGGCCCGGUCGCAAGAUCACGCGCAAGUCAAUAUUAUU -(((((....(-------(((.......(((((.......)))))))))...)))))((((((..(((....)))((((....))))..))))))............ ( -29.51) >DroGri_CAF1 7315 99 - 1 -UAUUAUU-------UUUUAGAUUAAAUCCGUUUUUCUACAAUGGCUGCCCUGGAUACUGCGCAUGGGUCGACCUGGUCGCAAGAUCACGCGCAAAUCAAUAUUAUU -.......-------.....((((..((((((......))...((....)).))))..(((((..(((....)))((((....))))..)))))))))......... ( -23.60) >DroWil_CAF1 11404 101 - 1 -CCAAUUUU-----UUUCUAGAUCAAAUCCGUUUUCCUACAAUGGCUGCCCUGGAUUUUGCGAAUGGGUCGACCCGGCCGCAAAAUCACACGCAAAACAAUAUUAUU -........-----................(((((((......))..((....(((((((((..((((....))))..)))))))))....)))))))......... ( -24.30) >DroYak_CAF1 7151 106 - 1 -CAACUCCUUUACAUAACCAGAUCAAGUCCGUUUUCCUACAAUGGCUGCCCUGGAUCUUGCGAAUGGGUCGACCUGGCCGCAAGAUCACACGCAAAACAAUACUACU -.................(((....((.(((((.......)))))))...)))(((((((((..((((....))))..))))))))).................... ( -25.70) >DroMoj_CAF1 7824 105 - 1 CGAUUUUUUCG--UCUGUCAGAUCAAAUCCGUUUUCCUACAAUGGCUGCCCUGGAUAUUGCGUAUGGGCCGGCCUGGUCGCAAGAUCACGCGCAAAUCAAUACUAUU .(((((..((.--.......))..)))))(((...........((((((((..............))).)))))(((((....))))).)))............... ( -24.44) >consensus _CAUUUUUU_____UUACCAGAUCAAAUCCGUUUUCCUACAAUGGCUGCCCUGGAUAUUGCGAAUGGGUCGACCCGGUCGCAAGAUCACACGCAAAACAAUACUAUU ............................(((((.......))))).(((....(((.(((((..((((....))))..))))).)))....)))............. (-18.37 = -18.15 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:05 2006