Locus 338

Sequence ID 2L_DroMel_CAF1
Location 1,012,972 – 1,013,083
Length 111
Max. P 0.754485
window538

overview

Window 8

Location 1,012,972 – 1,013,083
Length 111
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 80.64
Mean single sequence MFE -22.23
Consensus MFE -15.99
Energy contribution -17.24
Covariance contribution 1.25
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.72
SVM decision value 0.48
SVM RNA-class probability 0.754485
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1012972 111 - 22407834
UACAAAACAUAUAUUAUUCAUAUACAAU----AUGGUGAAUGUCAU---UAUCUAUCUAACCAGCAUGGGCUCGAUAUUCGAAGCGAAUCGGGCCGUGUUUUACCAGACCAUAUGUAU
......((((((..(((((((.......----...)))))))....---......(((....(((((((.((((((..(((...)))))))))))))))).....)))..)))))).. ( -23.70)
>DroSec_CAF1 124695 113 - 1
UACAAAACAUAUACUAUUCAUAUACAAU----AUGGUGAAUGUCAUUAUUAUCUAUCUAACCAGCAUGGGCUCGAUC-UCGAAGCGAAUCGGGCCGUGUUUUACCAGACCAUAUGUAU
.....................(((((.(----(((((.((((....))))............(((((((.((((((.-(((...)))))))))))))))).......))))))))))) ( -25.30)
>DroYak_CAF1 132145 93 - 1
UACA--ACAUAUAUUAUUCAUAUACAAUAUAUAUGGUGAAUGUCAU---UAUCUAUCUAACCAGCAUGGU--------------------UAGCCGUGUUUUACCAGACCAUAUGUAU
....--....................((((((((((((.....)..---.............(((((((.--------------------...))))))).......))))))))))) ( -17.70)
>consensus
UACAAAACAUAUAUUAUUCAUAUACAAU____AUGGUGAAUGUCAU___UAUCUAUCUAACCAGCAUGGGCUCGAU__UCGAAGCGAAUCGGGCCGUGUUUUACCAGACCAUAUGUAU
......((((((..(((((((..............))))))).............(((....(((((((.((((((...........))))))))))))).....)))..)))))).. (-15.99 = -17.24 +   1.25) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:23 2006