Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,012,972 – 1,013,083 |
Length | 111 |
Max. P | 0.754485 |
Location | 1,012,972 – 1,013,083 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 80.64 |
Mean single sequence MFE | -22.23 |
Consensus MFE | -15.99 |
Energy contribution | -17.24 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.77 |
Structure conservation index | 0.72 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.754485 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1012972 111 - 22407834 UACAAAACAUAUAUUAUUCAUAUACAAU----AUGGUGAAUGUCAU---UAUCUAUCUAACCAGCAUGGGCUCGAUAUUCGAAGCGAAUCGGGCCGUGUUUUACCAGACCAUAUGUAU ......((((((..(((((((.......----...)))))))....---......(((....(((((((.((((((..(((...)))))))))))))))).....)))..)))))).. ( -23.70) >DroSec_CAF1 124695 113 - 1 UACAAAACAUAUACUAUUCAUAUACAAU----AUGGUGAAUGUCAUUAUUAUCUAUCUAACCAGCAUGGGCUCGAUC-UCGAAGCGAAUCGGGCCGUGUUUUACCAGACCAUAUGUAU .....................(((((.(----(((((.((((....))))............(((((((.((((((.-(((...)))))))))))))))).......))))))))))) ( -25.30) >DroYak_CAF1 132145 93 - 1 UACA--ACAUAUAUUAUUCAUAUACAAUAUAUAUGGUGAAUGUCAU---UAUCUAUCUAACCAGCAUGGU--------------------UAGCCGUGUUUUACCAGACCAUAUGUAU ....--....................((((((((((((.....)..---.............(((((((.--------------------...))))))).......))))))))))) ( -17.70) >consensus UACAAAACAUAUAUUAUUCAUAUACAAU____AUGGUGAAUGUCAU___UAUCUAUCUAACCAGCAUGGGCUCGAU__UCGAAGCGAAUCGGGCCGUGUUUUACCAGACCAUAUGUAU ......((((((..(((((((..............))))))).............(((....(((((((.((((((...........))))))))))))).....)))..)))))).. (-15.99 = -17.24 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:23 2006