| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,790,828 – 9,790,940 |
| Length | 112 |
| Max. P | 0.570306 |
| Location | 9,790,828 – 9,790,940 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 88.41 |
| Mean single sequence MFE | -25.70 |
| Consensus MFE | -22.31 |
| Energy contribution | -21.87 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.570306 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9790828 112 + 22407834 AUUUUCGAAAUUCUGGUCGGUAUUUACCAAACAUUAAUUCUAUGAUUGGUAUUUUAUUACGAUACCGAAGCCGGUAUAUUUGGAACAUCCGGUAACACUGGCAGUCUGUUUG .....((((...((..((((((((((((((.(((.......))).)))))).........)))))))).((((((....((((.....))))....))))))))....)))) ( -28.60) >DroSec_CAF1 7680 104 + 1 -ACUCCGAAAUUCUGGUCAGUAUUUACCAAACA-------UAUGAUUGGUAUUUUAUUACGAUACCAAAGCCGGUAUAGUAUAAACAUCCGGUCACACUGGCAGUCUGUUUG -....((((...(((.(((((............-------.....((((((((.......)))))))).(((((.((.((....)))))))))...))))))))....)))) ( -22.50) >DroSim_CAF1 7712 104 + 1 -ACUCCGAAAUUCUGGUCAGUAUUUACCAAACA-------UAUGAUUGGUAUUUUAUUACGAUACCAAGGCCGGUAUAGUAUAAACAUCCGGUCACACUGGCAGUCUGUUUG -....((((...(((.(((((............-------.....((((((((.......))))))))((((((.((.((....))))))))))..))))))))....)))) ( -26.00) >consensus _ACUCCGAAAUUCUGGUCAGUAUUUACCAAACA_______UAUGAUUGGUAUUUUAUUACGAUACCAAAGCCGGUAUAGUAUAAACAUCCGGUCACACUGGCAGUCUGUUUG .....((((...(((.(((((........................((((((((.......)))))))).(((((..............)))))...))))))))....)))) (-22.31 = -21.87 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:59 2006