Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,789,785 – 9,789,905 |
Length | 120 |
Max. P | 0.534565 |
Location | 9,789,785 – 9,789,905 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.23 |
Mean single sequence MFE | -30.07 |
Consensus MFE | -20.83 |
Energy contribution | -21.17 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.12 |
Mean z-score | -1.92 |
Structure conservation index | 0.69 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534565 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9789785 120 + 22407834 CUCACCUGGGGUUGUACUGAUUUGUCAUUCUCCAUUUCUGCAUCGUCAUCGGACUCCGAAUCCAUUUCAGCAGCAUUCUUGCCAUUUCUAACGGAUAAAGUCGGAGCCAUGCUCAGCUUG ......(((((.((.((......))))..))))).....((...(.(((.((.((((((((((.((......(((....))).......)).))))....))))))))))))...))... ( -25.62) >DroSec_CAF1 6898 112 + 1 CUCACCUGGGGUUGUGCUGACUUGUCAUCCUCUAUUUCUGCAUCGUCAUCGGACUCCGAAUUUAUUUCAGCUGCAUUCUUGCCAUUUUU--------GAGUCCGAGUCGUGCUCAUCUUU .......((((.((.((......)))).)))).......(((.((.(.((((((((.(((.....)))....(((....))).......--------))))))))).)))))........ ( -28.50) >DroSim_CAF1 6928 112 + 1 CUCACCUGGGGUUGUGCUGCCUUGUCAUCCUCAAUUUCUGCAUCGUCAUCGGACUCCGAAUUUAUUUCAGCUUCAUUCUUGCCAUUUUG--------GAGUCCGAGACGUGCUCAGCUUU ......(((((.((.((......)))).)))))......(((.((((.((((((((((((.....))).((.........))......)--------)))))))))))))))........ ( -36.10) >consensus CUCACCUGGGGUUGUGCUGACUUGUCAUCCUCAAUUUCUGCAUCGUCAUCGGACUCCGAAUUUAUUUCAGCUGCAUUCUUGCCAUUUUU________GAGUCCGAGACGUGCUCAGCUUU .......((((.((.((......)))).)))).......((((.....((((((((.(((.....)))....(((....)))...............))))))))...))))........ (-20.83 = -21.17 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:58 2006