Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,788,922 – 9,789,036 |
Length | 114 |
Max. P | 0.963999 |
Location | 9,788,922 – 9,789,036 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 91.28 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -21.00 |
Energy contribution | -22.33 |
Covariance contribution | 1.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.32 |
Structure conservation index | 0.77 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591633 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9788922 114 + 22407834 AAAGGGAGGUGGAA-AAAUGAUUUAUCAUGUAGCCACCAAGGAGGGCGAAAUGUUCAAGAUCAGAUGGAAAACUAUGGGCCAAAGGAUGAUUCCUGAGAGCCAAGCAAGAAUCUG .......(((((..-..((((....))))....))))).....((((.....)))).....(((((......((...((((..((((....))))..).))).)).....))))) ( -27.60) >DroSec_CAF1 6087 114 + 1 UGAG-GAGGUGAAAAAGAUUAUUGAUCAUGUAGGCACCAAGGAGGGCGAAAUGAUCAAGAUCAGAUGGAAAACUAUGGAUCAAAGGAUCAUUCCUGAGAACCAAGCAAGAAUCUG ....-...........((((.((((((((....((.((.....))))...))))))))))))((((......((.(((.((..((((....))))..)).))))).....)))). ( -27.00) >DroSim_CAF1 6127 114 + 1 UGAG-GAGGUGAAAAAAAUUAUUGAUCAUAUAGCCACCAAGGAGGGCGAAAUGAUCAAGAUCAGAUGGAAAACUAUGGAUCAAAGGAUCAUUCCUGAGAACCAAGCAAGAAUCUG ....-................((((((((...(((.(....)..)))...))))))))...(((((......((.(((.((..((((....))))..)).))))).....))))) ( -27.30) >consensus UGAG_GAGGUGAAAAAAAUUAUUGAUCAUGUAGCCACCAAGGAGGGCGAAAUGAUCAAGAUCAGAUGGAAAACUAUGGAUCAAAGGAUCAUUCCUGAGAACCAAGCAAGAAUCUG .....................((((((((...(((.(....)..)))...))))))))...(((((......((.(((.((..((((....))))..)).))))).....))))) (-21.00 = -22.33 + 1.33)
Location | 9,788,922 – 9,789,036 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 91.28 |
Mean single sequence MFE | -26.30 |
Consensus MFE | -22.59 |
Energy contribution | -23.37 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.03 |
Mean z-score | -3.56 |
Structure conservation index | 0.86 |
SVM decision value | 1.56 |
SVM RNA-class probability | 0.963999 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9788922 114 - 22407834 CAGAUUCUUGCUUGGCUCUCAGGAAUCAUCCUUUGGCCCAUAGUUUUCCAUCUGAUCUUGAACAUUUCGCCCUCCUUGGUGGCUACAUGAUAAAUCAUUU-UUCCACCUCCCUUU (((((....(((.((((...((((....))))..))))...))).....))))).......................(((((..(.((((....)))).)-..)))))....... ( -24.30) >DroSec_CAF1 6087 114 - 1 CAGAUUCUUGCUUGGUUCUCAGGAAUGAUCCUUUGAUCCAUAGUUUUCCAUCUGAUCUUGAUCAUUUCGCCCUCCUUGGUGCCUACAUGAUCAAUAAUCUUUUUCACCUC-CUCA (((((....((((((.((..((((....))))..)).))).))).....)))))...((((((((...((((.....)).))....))))))))................-.... ( -26.50) >DroSim_CAF1 6127 114 - 1 CAGAUUCUUGCUUGGUUCUCAGGAAUGAUCCUUUGAUCCAUAGUUUUCCAUCUGAUCUUGAUCAUUUCGCCCUCCUUGGUGGCUAUAUGAUCAAUAAUUUUUUUCACCUC-CUCA (((((....((((((.((..((((....))))..)).))).))).....)))))...((((((((...(((..(....).)))...))))))))................-.... ( -28.10) >consensus CAGAUUCUUGCUUGGUUCUCAGGAAUGAUCCUUUGAUCCAUAGUUUUCCAUCUGAUCUUGAUCAUUUCGCCCUCCUUGGUGGCUACAUGAUCAAUAAUUUUUUUCACCUC_CUCA (((((....((((((.((..((((....))))..)).))).))).....)))))...((((((((.(((((......)))))....))))))))..................... (-22.59 = -23.37 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:57 2006