Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,785,779 – 9,785,878 |
Length | 99 |
Max. P | 0.882840 |
Location | 9,785,779 – 9,785,878 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 93.11 |
Mean single sequence MFE | -19.86 |
Consensus MFE | -18.26 |
Energy contribution | -18.14 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.34 |
Structure conservation index | 0.92 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882840 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9785779 99 + 22407834 UCGC-CAUUCAUUAUCUCUAACCCACAUCUAUGGGGAUUUCGCAGUUAAGCCAGUGUAUUUGCACCCUCAA-AUCAAACAUUUGCCAACCGCUAACUGCCG ....-................((((......))))......(((((((.((..((((....))))...(((-((.....)))))......))))))))).. ( -19.20) >DroSec_CAF1 2970 100 + 1 UCGCCCAUUCAUUAUCUCUAACCCAUAUCUAUGGGGAUUUCGCAGUUAAGCCAGUGUAUUUGCACCCUCAA-AUCAAACAUUUGCCAACCGCUAACUGCCG .....................(((((....)))))......(((((((.((..((((....))))...(((-((.....)))))......))))))))).. ( -20.50) >DroSim_CAF1 2981 100 + 1 UCGCCCAUUCAUUAUCUCUAACCCAUAUCUAUGGGGAUUUCGCAGUUAAGCCAGUGUAUUUGCACCCUCAA-AUCAAACAUUUGCCAACCGCUAACUGCCG .....................(((((....)))))......(((((((.((..((((....))))...(((-((.....)))))......))))))))).. ( -20.50) >DroEre_CAF1 2907 100 + 1 UCGC-CAUUCAUUAUCUCUCACCCAUAUCUGUGGGGAUUUAGUAGUUAAGCCAGUGUAUUUGCACCCUUUAGAACAAACAUUUGCCCAGCGCUAACUGCCG ....-.............((.(((((....)))))))....(((((((.((..((((....))))..................((...))))))))))).. ( -18.40) >DroYak_CAF1 3087 99 + 1 UCGU-CAUUCAUUAUCUCUAACCCAUAUCUGUGGGGACUUAGCAGUUAAGCCAGUGUAUUUGCACCCUCGA-AUCAAAUAUUUGCCAACCGCUAACUGCCG ..((-(.....(((....)))(((((....))))))))...(((((((.((..((((....))))...(((-((.....)))))......))))))))).. ( -20.70) >consensus UCGC_CAUUCAUUAUCUCUAACCCAUAUCUAUGGGGAUUUCGCAGUUAAGCCAGUGUAUUUGCACCCUCAA_AUCAAACAUUUGCCAACCGCUAACUGCCG .....................(((((....)))))......(((((((.((..((((....)))).........(((....)))......))))))))).. (-18.26 = -18.14 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:55 2006