Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,778,004 – 9,778,094 |
Length | 90 |
Max. P | 0.998064 |
Location | 9,778,004 – 9,778,094 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 77.59 |
Mean single sequence MFE | -23.28 |
Consensus MFE | -9.63 |
Energy contribution | -10.43 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.20 |
Mean z-score | -3.05 |
Structure conservation index | 0.41 |
SVM decision value | 3.00 |
SVM RNA-class probability | 0.998064 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9778004 90 + 22407834 AGGGGAUAUUUCAAUUUCGUUGGAGU---GGUUCCCAUA-----AAAAUAGCACUUCCUUUUUUUUGGGGGCUUUCCACUCCAAUUAAAUUCCCAUUU .(((((....))(((((.((((((((---((((((((.(-----((((.((......)).)))))))))))....)))))))))).)))))))).... ( -29.90) >DroSec_CAF1 60272 83 + 1 AG--GAUAUUUCAAUUUCGUUGGAGU---GGUUUCCAUA-----GAAAUACCACUUCGUU---UUCGGGGGCUUUCCACUUCAAUUAAAUUCCCAU-- .(--((.......((((.((((((((---((..(((...-----((((.((......)))---)))..)))....)))))))))).)))))))...-- ( -19.91) >DroSim_CAF1 59476 80 + 1 AG--GAUAUUUUAAUUUCGUUGGAGUGGUGGUUUCCAUA-----GAAAUACCACUU---------CGGGGGCUUUCCACUCCAAUUAAAUUCCCAU-- .(--((.......((((.((((((((((.(((..((..(-----(........)).---------.))..)))..)))))))))).)))))))...-- ( -27.61) >DroEre_CAF1 59333 83 + 1 AG--GAUAUUUCAAUUUAGUUGGAGU---GGUUCCCAUA-----AAAAUACCACUUCGUU---U-GG-GGGGCUUCCAUUCAAAUGAAAUUCCCAAUA .(--(..(((((.........(((((---(((.......-----.....))))))))(((---(-((-(((....)).))))))))))))..)).... ( -22.10) >DroYak_CAF1 61508 88 + 1 AG--GAUAUUUCAAUUUAGUUCGAGU---GGUUCCCAAAAGAAAAAAAAAACACCUCGUU---U-GGCGGGGUUUCCAUGCCAAAUAAAUUCCC-AUA .(--((........(((..(((...(---((...)))...)))..))).........(((---(-((((((....)).))))))))....))).-... ( -16.90) >consensus AG__GAUAUUUCAAUUUCGUUGGAGU___GGUUCCCAUA_____AAAAUACCACUUCGUU___U_CGGGGGCUUUCCACUCCAAUUAAAUUCCCAUU_ ............(((((.((((((((...(((((((..............................)))))))....)))))))).)))))....... ( -9.63 = -10.43 + 0.80)
Location | 9,778,004 – 9,778,094 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 77.59 |
Mean single sequence MFE | -20.32 |
Consensus MFE | -5.24 |
Energy contribution | -5.88 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.11 |
Mean z-score | -2.13 |
Structure conservation index | 0.26 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.887358 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9778004 90 - 22407834 AAAUGGGAAUUUAAUUGGAGUGGAAAGCCCCCAAAAAAAAGGAAGUGCUAUUUU-----UAUGGGAACC---ACUCCAACGAAAUUGAAAUAUCCCCU ....((((((((..(((((((((......((((.(((((.((.....)).))))-----).))))..))---)))))))..)))).......)))).. ( -26.41) >DroSec_CAF1 60272 83 - 1 --AUGGGAAUUUAAUUGAAGUGGAAAGCCCCCGAA---AACGAAGUGGUAUUUC-----UAUGGAAACC---ACUCCAACGAAAUUGAAAUAUC--CU --..((((.(((((((....((((.......((..---..))..(((((..(((-----....))))))---))))))....)))))))...))--)) ( -17.80) >DroSim_CAF1 59476 80 - 1 --AUGGGAAUUUAAUUGGAGUGGAAAGCCCCCG---------AAGUGGUAUUUC-----UAUGGAAACCACCACUCCAACGAAAUUAAAAUAUC--CU --..((((((((..(((((((((...(((....---------....))).((((-----....))))...)))))))))..)))).......))--)) ( -20.91) >DroEre_CAF1 59333 83 - 1 UAUUGGGAAUUUCAUUUGAAUGGAAGCCCC-CC-A---AACGAAGUGGUAUUUU-----UAUGGGAACC---ACUCCAACUAAAUUGAAAUAUC--CU ....((((((((((((((..(((.......-))-)---...(.((((((.(((.-----...))).)))---))).)...)))).)))))).))--)) ( -16.80) >DroYak_CAF1 61508 88 - 1 UAU-GGGAAUUUAUUUGGCAUGGAAACCCCGCC-A---AACGAGGUGUUUUUUUUUUCUUUUGGGAACC---ACUCGAACUAAAUUGAAAUAUC--CU ...-((((((((.((((((..(....)...)))-)---))((((..((((((..........)))))).---.))))..........)))).))--)) ( -19.70) >consensus _AAUGGGAAUUUAAUUGGAGUGGAAAGCCCCCC_A___AACGAAGUGGUAUUUU_____UAUGGGAACC___ACUCCAACGAAAUUGAAAUAUC__CU ....(((..(((..........)))..)))................((((((((.......((((.........))))........)))))))).... ( -5.24 = -5.88 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:52 2006