Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,011,976 – 1,012,067 |
Length | 91 |
Max. P | 0.940266 |
Location | 1,011,976 – 1,012,067 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.78 |
Mean single sequence MFE | -17.43 |
Consensus MFE | -16.06 |
Energy contribution | -16.05 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.91 |
Structure conservation index | 0.92 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.940266 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1011976 91 - 22407834 UUACACUACACUACAAGAAAAAGCAAAUGAGAAAUCAAUAUUACAAUAACUGUGGCAAGUCCGAACAACAACUUGGGGCUUGCGA-----------------------------AAAAUU ........(((................(((....)))..............)))((((((((.((.......)).))))))))..-----------------------------...... ( -17.11) >DroSec_CAF1 123680 99 - 1 UUACACUACACUACAAGAAAAAGCAAAUGAGAAAUCAAUAUUACAAUAACUGUGGCAAGUCCGAACAACAACUUGGGGCUUGCGA---------------------AAAUGAGAAAAAUU ........(((................(((....)))..............)))((((((((.((.......)).))))))))..---------------------.............. ( -17.11) >DroSim_CAF1 124253 99 - 1 UUACACUACACUACAAGAAAAAGCAAAUGAGAAAUCAAUAUUACAAUAACUGUGGCAAGUCCCAACAACAACUGGGGGCUUGCGA---------------------AAAUGAGAAAAAUU ........(((................(((....)))..............)))(((((((((...........)))))))))..---------------------.............. ( -19.01) >DroYak_CAF1 131025 120 - 1 UUACACUACACUACAAAUAAAAGCAAAUGAGAAAUCAAUAUUACAAUAACUGUGGCAAGUCCGAACAACAACUGGGGGCUUGCGAAAUGAGAAAAAAUGAUGAAGAAAAUGAGAAAAAUU ..........((.((............(((....)))....((((.....))))((((((((...((.....)).)))))))).................)).))............... ( -16.50) >consensus UUACACUACACUACAAGAAAAAGCAAAUGAGAAAUCAAUAUUACAAUAACUGUGGCAAGUCCGAACAACAACUGGGGGCUUGCGA_____________________AAAUGAGAAAAAUU ........(((................(((....)))..............)))((((((((.............))))))))..................................... (-16.06 = -16.05 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:22 2006