Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,769,545 – 9,769,665 |
Length | 120 |
Max. P | 0.906561 |
Location | 9,769,545 – 9,769,665 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.70 |
Mean single sequence MFE | -40.97 |
Consensus MFE | -30.33 |
Energy contribution | -29.53 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.40 |
Mean z-score | -1.45 |
Structure conservation index | 0.74 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.906561 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9769545 120 + 22407834 UACCAGGGACGCUCCAUCCUCGGUGUUAAGAUCACCAAGGGAGGUGAGACCAUAAACGGCAAGGCCAAGCCCGGCAUCUUCCUGGAGGCCGGUAUCCAUGCCCGCGAGUGGAUUGCUCCA .....((..((.((((..(.(((.((...(((.(((..(((.((.....))......(((...)))...)))(((.(((....))).)))))))))...))))).)..)))).))..)). ( -41.40) >DroVir_CAF1 69280 105 + 1 UAUCAGGGACGUUCAAUUUUGGGUGUCAAGAUCUCCAAGAG---------------CCUUAGCGAGAAGCCUGGCGUUUUCUUGGAGGCUGGAAUUCAUGCCCGCGAGUGGAUUGCCCCU .....(((..(((((.((.(((((.((.((.((((((((((---------------((...((.....))..)))....))))))))))).))......))))).)).)))))..))).. ( -35.50) >DroPse_CAF1 49574 105 + 1 UAUCAGGGACGCUCUAUUCUGGGCGUGAAGAUCACCAAG---------------AGCGGCAAGGAGAAGCCCGGCAUUUUCCUGGAGGCCGGCAUCCACGCUCGCGAGUGGAUCGCCCCC .....(((.((.(((((((((((((((....((.....)---------------).((((.(((((((((...)).)))))))....)))).....)))))))).))))))).))))).. ( -42.90) >DroGri_CAF1 71781 105 + 1 UAUCAGGGACGUUCAAUUCUGGGUGUGAAGAUCUCCAAGAG---------------CCAGAGCGAGAAGCCCGGCAUCUUCCUCGAGGCUGGCAUUCACGCCCGCGAGUGGAUUGGUCCA ......(((((((((.(((((((((((((..((.....))(---------------((((..(((((((........))).))))...))))).)))))))))).))))))))..)))). ( -42.20) >DroAna_CAF1 58962 108 + 1 UACCAGGGACGCUCCAUUUUGGGCGUGAAGAUCAACAAG------------AACAAGGGCUCCAACAAGCCUGGUAUCUUUUUGGAGGCCGGUAUCCAUGCCCGCGAGUGGAUUGCUCCU ....(((..((.(((((((((((((((...(((......------------.....(((((......)))))(((.(((....))).))))))...)))))))).))))))).))..))) ( -40.90) >DroPer_CAF1 49033 105 + 1 UAUCAGGGACGCUCUAUUCUGGGCGUGAAGAUCACCAAG---------------AGCGGCAAGGAGAAGCCCGGCAUUUUCCUGGAGGCCGGCAUCCACGCUCGCGAGUGGAUCGCCCCC .....(((.((.(((((((((((((((....((.....)---------------).((((.(((((((((...)).)))))))....)))).....)))))))).))))))).))))).. ( -42.90) >consensus UAUCAGGGACGCUCAAUUCUGGGCGUGAAGAUCACCAAG_______________A_CGGCAACGAGAAGCCCGGCAUCUUCCUGGAGGCCGGCAUCCACGCCCGCGAGUGGAUUGCCCCA .....(((.((.(((((((((((((((...............................((........))(((((.(((....))).)))))....)))))))).))))))).)).))). (-30.33 = -29.53 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:47 2006