Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,760,569 – 9,760,673 |
Length | 104 |
Max. P | 0.551836 |
Location | 9,760,569 – 9,760,673 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 77.59 |
Mean single sequence MFE | -33.32 |
Consensus MFE | -18.57 |
Energy contribution | -18.52 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.36 |
Mean z-score | -1.62 |
Structure conservation index | 0.56 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551836 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9760569 104 - 22407834 ---UACCAGCGCCCUGUUCCACCUUUAGGCUCUCAAAGGGCUUUAAGCCAUCACCCUCAU------UGAGCAGCACAUCCAGCAGCUUAUCCUUUUCGUUGCUAAAGAUAUCG- ---.....(((((((......((....)).......))))).....((((..........------)).)).))..(((.((((((...........))))))...)))....- ( -20.32) >DroVir_CAF1 57900 105 - 1 ---UGCCCGUUGCAUGCUCCACUUUGAGAUUCUCAAAGGGCUUCAGGCUCUCGUCCGUGC------UGAGCAGCACAUCGAGCAGUUUGUCUUUCUCAUUGCUAUAUAUGUCCA ---.((((.(((....(((......))).....))).))))..((((((((((...((((------(....)))))..)))).))))))......................... ( -29.00) >DroPse_CAF1 41290 110 - 1 ---UUCCGCCGCCAUGCUCCACCUUGAGGCUCUCGAAGGGCUUCAGGCCAUCGCCCUCGUCCGUGCUGAGCAGGACAUCCAGCAGCUUGUCCUUCUCGCUGCUGAAAAUGUCC- ---...........((((((((..((((((((.....))))))))(((....))).......)))..)))))((((((.(((((((..(.....)..)))))))...))))))- ( -40.90) >DroGri_CAF1 58842 108 - 1 CGCUGCCGGUGGCAUGCUCCACCUUCAGAUUCUCGAAGGGCUUGAGGCCCUCGUCCUGGU------UGAGCAGCACAUCGAGCAGCUUGUCCUUCUCGCUGCUGUAGAUAUCCA ..(((((((((((.(((((.(((....((....(((.((((.....)))))))))..)))------.))))))).)))))((((((..(.....)..))))))))))....... ( -41.90) >DroAna_CAF1 48963 104 - 1 ---UGCCGGCGCCCUGUUCCACCUUCAGGCUCUCGAACGGCUUCAGGCCGUCGCCCUCGU------UCAGCAAGACAUCCAAUAGCUUGUCCUUCUCAUUGCUGAAGAUAUCC- ---....((((((.((.........)))))....((.((((.....))))))))).((.(------(((((((((((..(....)..)))).......)))))))))).....- ( -28.51) >DroPer_CAF1 40742 110 - 1 ---UUCCGCCGCCAUGCUCCACCUUGAGGCUCUCGAAGGGCUUCAGGCCAUCGCCCUCGUCCGUGCUGAGCAGGACAUCCAGCAGCUUGUCCUUCUCGCUGCUGAAAAUGUCU- ---...........((((((((..((((((((.....))))))))(((....))).......)))..)))))((((((.(((((((..(.....)..)))))))...))))))- ( -39.30) >consensus ___UGCCGGCGCCAUGCUCCACCUUGAGGCUCUCGAAGGGCUUCAGGCCAUCGCCCUCGU______UGAGCAGCACAUCCAGCAGCUUGUCCUUCUCGCUGCUGAAGAUAUCC_ ...........((.(((((.....((((((((.....))))))))(((....)))............)))))))......((((((..(.....)..))))))........... (-18.57 = -18.52 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:45 2006