Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,758,810 – 9,758,929 |
Length | 119 |
Max. P | 0.755379 |
Location | 9,758,810 – 9,758,929 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 89.67 |
Mean single sequence MFE | -26.57 |
Consensus MFE | -20.50 |
Energy contribution | -20.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.17 |
Mean z-score | -1.84 |
Structure conservation index | 0.77 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755379 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9758810 119 - 22407834 AAAUGCUCCUAGUUGGCCUGCAUCGGCUGUACCCCAAAACGGGGCUCCACCUUAACCCCCCGAUAUCGUGCGAUUCACGACUACAUAUCUACAUGCACCACCUACAUACAACACACACC .........(((.(((..(((((.((..(..((((.....))))..)..))..........(((((((((.....))))).....))))...)))))))).)))............... ( -23.00) >DroSec_CAF1 40878 119 - 1 AAAUGCUCCUAGUUGGCCUGCAUCGGCUGUACCCCAAAACGGGGCUCCACCUUAGCCCCCCGAUAUCGGGCGAUUCACGACUACAUAUCUACAUGCACCACCUACAUACAGCACACACC ...((((..(((.(((..(((((.(((((..((((.....))))........)))))(((((....)))).)....................)))))))).))).....))))...... ( -28.80) >DroEre_CAF1 40135 112 - 1 AAAUGCUCCUAGUUGGCCUGCAUCGGCUGUACCCCGAAAUGGGGCUCCACCUAGGCCCCUCGAUAUCGGGCGACUCACGACUACAUAACUAC-------ACCUACAUACACCACACACC .........(((((((((......))).((..(((((...((((((.......))))))......)))))..))...)))))).........-------.................... ( -28.30) >DroYak_CAF1 42329 112 - 1 AAAUGCUCCUAGUUGGCCUGCAUCGGCUGUACCCCGAAACGGGGCUCCACCUUAGCCUCCCGAUAUCGGGCGAUUCACGUCUACAUAUCUAC-------ACCUACACACACCAUACACC ...........((.(((.((.((((((((..(((((...)))))........))))).((((....)))).))).)).))).))........-------.................... ( -26.20) >consensus AAAUGCUCCUAGUUGGCCUGCAUCGGCUGUACCCCAAAACGGGGCUCCACCUUAGCCCCCCGAUAUCGGGCGAUUCACGACUACAUAUCUAC_______ACCUACAUACACCACACACC .........(((((((((((.(((((..((........))((((((.......)))))))))))..)))))......)))))).................................... (-20.50 = -20.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:43 2006