| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,756,282 – 9,756,377 |
| Length | 95 |
| Max. P | 0.641314 |
| Location | 9,756,282 – 9,756,377 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 80.65 |
| Mean single sequence MFE | -22.57 |
| Consensus MFE | -18.28 |
| Energy contribution | -18.42 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.641314 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9756282 95 - 22407834 CAACAACAGCAUCU---AGAAUGUGGCAACAAAGACUUCAGGUUAUUGCAUGCAUUUUAAUUAGUAGACAAGCCAAGUGGGUUGCCACGAUA------CAUGUA-- ........((((.(---(...(((((((((....((((..(((..(((..(((..........)))..))))))))))..))))))))).))------.)))).-- ( -22.60) >DroGri_CAF1 48093 98 - 1 CAACCUCGGCAACA---ACAAUGUGGCAACAAAGGCUUCAGGUUAUUGCAUGCAUUUUAAUUAGUAGACAAGCCAAGUGGGUUGCCGCUGUG-----GCAAGUACA ...((.((((.(((---....)))((((((...(((((....((((((.((........))))))))..)))))......)))))))))).)-----)........ ( -24.80) >DroSec_CAF1 38340 93 - 1 --ACAACAGCAUCU---AGAAUGUGGCAACAAAGACUUCAGGUUAUUGCAUGCAUUUUAAUUAGUAGACAAGCCAAGUGGGUUGCCACGAUA------CAUGUA-- --......((((.(---(...(((((((((....((((..(((..(((..(((..........)))..))))))))))..))))))))).))------.)))).-- ( -22.60) >DroSim_CAF1 37154 95 - 1 CAACAACAGCAUCU---AGAAUGUGGCAACAAAGACUUCAGGUUAUUGCAUGCAUUUUAAUUAGUAGACAAGCCAAGUGGGUUGCCACGAUA------CAUGUA-- ........((((.(---(...(((((((((....((((..(((..(((..(((..........)))..))))))))))..))))))))).))------.)))).-- ( -22.60) >DroAna_CAF1 44922 82 - 1 ----------AUCUAGGAGAAUGUGGCAACAAAGGCUUCAGGUUAUUGCAUGCAUUUUAAUUAGUAGACAAGCCAAGUGGGUUGCCACUAUA-------------- ----------............((((((((...(((((....((((((.((........))))))))..)))))......))))))))....-------------- ( -20.30) >DroPer_CAF1 37488 89 - 1 C------UGC--CU---------GGGCAACAAAGGCUUCAGGUUAUUGCAUGCAUUUUAAUUAGUAGACAAGCCAAGUGGGCUGCCACUAUAUAGCGACAGGGACA .------..(--((---------(.((......(((((....((((((.((........))))))))..))))).(((((....))))).....))..)))).... ( -22.50) >consensus C_ACAACAGCAUCU___AGAAUGUGGCAACAAAGACUUCAGGUUAUUGCAUGCAUUUUAAUUAGUAGACAAGCCAAGUGGGUUGCCACGAUA______CAUGUA__ ......................((((((((....((((..(((..(((..(((..........)))..))))))))))..)))))))).................. (-18.28 = -18.42 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:42 2006