Locus 3364

Sequence ID 2L_DroMel_CAF1
Location 9,753,364 – 9,753,471
Length 107
Max. P 0.754688
window5329

overview

Window 9

Location 9,753,364 – 9,753,471
Length 107
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 72.77
Mean single sequence MFE -17.78
Consensus MFE -7.19
Energy contribution -6.47
Covariance contribution -0.72
Combinations/Pair 1.14
Mean z-score -1.84
Structure conservation index 0.40
SVM decision value 0.48
SVM RNA-class probability 0.754688
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9753364 107 - 22407834
GUGAAAAGACGCAUAAUGUCCUUUUUACUCGCCCUUC--UCUUCCGUUCAGCCCUCUCUUCUGGCUUGAGCCUCGGUGCCCCCAG--CAUUGCCCUCUUUUCCUUUCCCUU
(((((((((((.....))).)))))))).........--......((((((((.........))).)))))..((((((.....)--)))))................... ( -20.00)
>DroPse_CAF1 35703 89 - 1
GUGAAAAGACGCAUAAUGUCCUUUUUACCCGACCUUCCUUCUUCCAC--------------UGUUUUAUCCGCCUGUGCCCGCUGGUCGUU--------CUCCUCUUCCUC
(((((((((((.....))).)))))))).(((((..........(((--------------.((.......))..)))......)))))..--------............ ( -13.39)
>DroEre_CAF1 34106 103 - 1
GUGAAAAGACGCAUAAUGUCCUUUUUACUCGCCCUUC--UCUUCCGUUCAGUCCUCUCCUCUGGCUUGAGCCUCGGUGCUCCCAG--CAUUGCCCUCUUUUCCUUUU----
(((((((((((.....))).)))))))).........--......((((((.((........)).))))))..((((((.....)--)))))...............---- ( -20.50)
>DroYak_CAF1 36670 107 - 1
GUGAAAAGACGCAUAAUGUCCUUUUUACUCGCCCUUC--UCUUCCGCUCAGCCCUCUCUUCUGGCUUGAGCCUCUGUGCUCCCAG--CAUUGCCCUCUUUUCCUCUCCCUC
..(((((((.(((........................--......((((((((.........))).)))))....((((.....)--))))))..)))))))......... ( -21.60)
>DroPer_CAF1 35135 89 - 1
GUGAAAAGACGCAUAAUGUCCUUUUUACCCGACCUUCCUUCUUCCAC--------------UGUUUUAUCCGCCUGUGCCCGCUGGUCGUU--------CUCCUCUUCCUC
(((((((((((.....))).)))))))).(((((..........(((--------------.((.......))..)))......)))))..--------............ ( -13.39)
>consensus
GUGAAAAGACGCAUAAUGUCCUUUUUACUCGCCCUUC__UCUUCCGCUCAG_CCUCUC_UCUGGCUUGAGCCUCUGUGCCCCCAG__CAUUGCCCUCUUUUCCUCUUCCUC
(((((((((((.....))).))))))))..(((.............................))).............................................. ( -7.19 =  -6.47 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:41 2006