Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,740,446 – 9,740,541 |
Length | 95 |
Max. P | 0.550322 |
Location | 9,740,446 – 9,740,541 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 87.78 |
Mean single sequence MFE | -19.88 |
Consensus MFE | -15.61 |
Energy contribution | -16.87 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.08 |
Mean z-score | -2.17 |
Structure conservation index | 0.79 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.550322 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9740446 95 - 22407834 AGUGUGUGUAUUUGCCUUGCUUUUGGCUUUUCUAUUUUACCAUCGACCCAAAUUGCGAGCGCGCUCUCCGUAUAAUAACAACAAAAAUACACACA ..((((((((((((((((((.(((((.....................)))))..))))).)).......((......)).....))))))))))) ( -23.40) >DroSec_CAF1 22846 95 - 1 UGUGUGUGUAUUUGCCUUGCUUUUGGCUUUUCUAUUUUACCAUCGACCCAAAUUGCGAGCGCGCUCUCCGUAUAAUAACAACACAAAUACACACA ..((((((((((((((((((.(((((.....................)))))..))))).)).......((......)).....))))))))))) ( -23.40) >DroSim_CAF1 22022 95 - 1 UGUGUGUGUAUUUGCCUUGCUUUUGGCUUUUCUAUUUUACCAUCGACCCAAAUUGCGAGCGCGCUCUCCGUAUAAUAACAACAAAAAUACACACA ..((((((((((((((((((.(((((.....................)))))..))))).)).......((......)).....))))))))))) ( -23.40) >DroWil_CAF1 34092 87 - 1 UUUUUCUACUUUUGCUUUGCUUUUGGCUUUUCCAUUUUACCAUCGACCCAAAUUGCGAGCGCGCAAC------ACAAACAUACGAAAA--ACACA ((((((((..((((..((((.(((((.....................)))))..((....)))))).------.))))..)).)))))--).... ( -11.40) >DroYak_CAF1 23571 95 - 1 UGUGUGUGUAUUUGCCUUGCUUUUGGCUUUUCUAUUUUACCAUCGACCCAAAUUGCGAGCGCGCUCUCCGUAUAAUAACAACAAAAAUACACACA ..((((((((((((((((((.(((((.....................)))))..))))).)).......((......)).....))))))))))) ( -23.40) >DroAna_CAF1 22765 91 - 1 UGUGAGUGUAUUCUCCUUGCUUUUGGCUUUUCUAUUUUACCAUCGACCCAAAUUGCGAGCGCGCUCU-CGUAUAAUAAC---AAAAAUCCACACA .(.((((((......(((((.(((((.....................)))))..))))).)))))).-)..........---............. ( -14.30) >consensus UGUGUGUGUAUUUGCCUUGCUUUUGGCUUUUCUAUUUUACCAUCGACCCAAAUUGCGAGCGCGCUCUCCGUAUAAUAACAACAAAAAUACACACA ..((((((((((((((((((.(((((.....................)))))..))))).)).......((......)).....))))))))))) (-15.61 = -16.87 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:37 2006