Locus 3359

Sequence ID 2L_DroMel_CAF1
Location 9,736,382 – 9,736,496
Length 114
Max. P 0.835530
window5323

overview

Window 3

Location 9,736,382 – 9,736,496
Length 114
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 72.33
Mean single sequence MFE -21.63
Consensus MFE -13.74
Energy contribution -14.17
Covariance contribution 0.44
Combinations/Pair 1.15
Mean z-score -1.63
Structure conservation index 0.64
SVM decision value 0.73
SVM RNA-class probability 0.835530
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9736382 114 - 22407834
AGCAGUAGAGUUGAUCCCACUAAGAAACCUUAGGUUAGCAUAAAGUAACUGCUAUCCUCGCACUUGUCGAUGGUUGAAUAUUAUAACGAAACUUUAGAGCUAAAUAUUCAAUAA--
(((..(((((((.............((((...((.(((((.........))))).))((((....).))).))))..............)))))))..))).............-- ( -19.83)
>DroSec_CAF1 18754 96 - 1
AGCAGUAGAGUUGCU-GCACUAAGAUGCCUUAGGUUAGCAUAAAGUAACUGCUAUA-----------------AGGAAUCCUUUAAGCCAACUUUAAAGCUAGAUACUCAAUAA--
(((..((((((((((-(..(((((....)))))..))))...........(((.((-----------------(((....)))))))).)))))))..))).............-- ( -23.10)
>DroSim_CAF1 17942 96 - 1
AGCAGUAGAGUUACU-GCACUAAGAAGCCUUAGGUUAGCAUAAAGUAACUGCUAUA-----------------AGGAAUCCUUUAAGCCAACUUUAAAGCAAGAUGCUCAAUAA--
.((((((....))))-)).(((((....)))))(((((((((((((....(((.((-----------------(((....))))))))..))))))........)))).)))..-- ( -20.70)
>DroYak_CAF1 19395 95 - 1
AGCGGUGGAGUUGUG-CCUCUAGGAAACCUUAGGUUGACAUACAGUAACAGCUAUA-----------------UGA--UACUUU-UGACAACUUUAAAGCUAAAUAAUCGAGAAAA
(((..((((((((((-(((...(....)...))))...((((.(((....))).))-----------------)).--......-..)))))))))..)))............... ( -22.90)
>consensus
AGCAGUAGAGUUGCU_CCACUAAGAAACCUUAGGUUAGCAUAAAGUAACUGCUAUA_________________AGGAAUACUUUAAGCCAACUUUAAAGCUAAAUACUCAAUAA__
.((..((((((((......(((((....)))))..(((((.........)))))..................................))))))))..))................ (-13.74 = -14.17 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:36 2006