Locus 3358

Sequence ID 2L_DroMel_CAF1
Location 9,733,784 – 9,733,884
Length 100
Max. P 0.953719
window5322

overview

Window 2

Location 9,733,784 – 9,733,884
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 90.37
Mean single sequence MFE -16.10
Consensus MFE -14.58
Energy contribution -14.46
Covariance contribution -0.12
Combinations/Pair 1.10
Mean z-score -1.62
Structure conservation index 0.91
SVM decision value 1.44
SVM RNA-class probability 0.953719
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9733784 100 - 22407834
UUACCAGUCCAACUAUUUUUAUUCACUUUCCCCACAGAGAGAGAUUUCCAGCAAUCACAACUGAUUUAAUUUAUUUUAUUGUGAUUUAAUUACAGUUGAA
.........(((((........((.(((((......))))).))........((((((((..(((.......)))...)))))))).......))))).. ( -14.80)
>DroSec_CAF1 16010 100 - 1
UUACCAGCCCAACUAUUUUUAUUCACUUUCCCCCCAGAGAGAGAUUUCCAGCAAUCACAACUGAUUUAAUUUAUUUUAUUGUGAUUUAAUUACAGUUGAA
.........(((((........((.(((((......))))).))........((((((((..(((.......)))...)))))))).......))))).. ( -14.80)
>DroSim_CAF1 15177 100 - 1
UUACCAGCCCAACUAUUUUUAUUCACUUUCCCCCCAGAGAGAGAUUUCCAGCAAUCACAACUGAUUUAAUUUAUUUUAUUGUGAUUUAAUUACAGUUGAA
.........(((((........((.(((((......))))).))........((((((((..(((.......)))...)))))))).......))))).. ( -14.80)
>DroEre_CAF1 16263 97 - 1
UUACAAGCCCAACUAUUUUUAUUCACUUUCCCC---GGGAGAGAUUUACAACAAUCACAACGGGCGCAAUUUAUUUUAUUGUGAUUUAAUUUAAGUUGAA
......((((................(((((..---.)))))((((......)))).....)))).(((((((..(((........)))..))))))).. ( -18.20)
>DroYak_CAF1 16581 97 - 1
UUACAAGCCCAACUAUUUUUAUUCACUUUCCCC---GGGAGAGAUUUCCAACAAUCACAACUGAUUCAAUUUGUUCGAUUGUGAUUUAAUUUAAGUAGAA
............((((((..(((..((((((..---.)))))).........((((((((.(((..........))).)))))))).)))..)))))).. ( -17.90)
>consensus
UUACCAGCCCAACUAUUUUUAUUCACUUUCCCC_CAGAGAGAGAUUUCCAGCAAUCACAACUGAUUUAAUUUAUUUUAUUGUGAUUUAAUUACAGUUGAA
.........(((((...........(((((........))))).........((((((((..((..........))..)))))))).......))))).. (-14.58 = -14.46 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:35 2006