Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,733,000 – 9,733,120 |
Length | 120 |
Max. P | 0.720957 |
Location | 9,733,000 – 9,733,120 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.56 |
Mean single sequence MFE | -34.62 |
Consensus MFE | -29.11 |
Energy contribution | -28.78 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.20 |
Mean z-score | -1.89 |
Structure conservation index | 0.84 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.720957 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9733000 120 - 22407834 GUUCUACAGCAUCAGUUUGCUGGUGCUGAUCUACUUCUUCCGGGAUAACCGCAUCUUCUGGUGGGAGGCCCUCAUCCUGUUCACCAUCUACAUCGGCUACGUGGCCUUCAUGAAGUGGAA ......(((((((((....))))))))).((((((((...(((.....)))((((....))))((((((((....(((((.........)))..))....).)))))))..)))))))). ( -43.50) >DroVir_CAF1 20250 120 - 1 AUUCUAUAGCAUCAGUUUGCUGGUAUUGAUCUACUUUUUUCGCGACAAUCGCAUCUUCUGGUGGGAGGCGCUCAUCCUGUUUACCAUAUACAUUGCCUAUGUGACCUUCAUGAAGUGGAA ......(((((......))))).......((((((((....(((....((.((((....)))).))..))).............((((((.......))))))........)))))))). ( -26.60) >DroGri_CAF1 20691 120 - 1 AUUCUAUAGCAUCAGUCUGCUGGUGUUGAUCUACUUUUUUCGCGACAAUCGCAUCUUUUGGUGGGAGGCGCUCAUCCUGUUUACCAUCUAUAUUGCCUAUGUGGCCUUCAUGAAGUGGAA ......(((((((((....))))))))).((((((((....((.(((...(((......(((((.(((((.......))))).))))).....)))...))).))......)))))))). ( -35.20) >DroWil_CAF1 24200 120 - 1 AUUCUAUAGCAUCAGCCUGCUGGUAUUGAUCUACUUUUUUCGCGACAAUCGCAUCUAUUGGUGGGAGGCCCUCAUACUCUUCACCAUCUAUAUUGCCUAUGUGGCCUUCAUGAAGUGGAA ..........(((((....))))).....((((((((....((.(((...(((.....(((((((((.........))).)))))).......)))...))).))......)))))))). ( -31.30) >DroMoj_CAF1 20997 120 - 1 AUUCUACAGCAUCAGCCUGCUGGUGCUGAUCUAUUUUUUUCGCGACAAUCGCAUCUUCUGGUGGGAGGCGCUCAUCCUAUUUACCAUAUACAUUGCCUAUGUGACCUUCAUGAAGUGGAA ......(((((((((....))))))))).((((((((....(((....((.((((....)))).))..))).............((((((.......))))))........)))))))). ( -34.60) >DroAna_CAF1 15538 120 - 1 CUUCUACAGUAUCAGCCUCCUGGUGCUGAUCUACUUUUUCCGGGACAAUCGCAUCUUCUGGUGGGAGGCGCUCAUCCUUUUCACCAUCUACAUCGCCUAUGUGACCUUCAUGAAGUGGAA ......(((((((((....))))))))).((((((((....(((..............(((((..(((........)))..)))))......((((....)))))))....)))))))). ( -36.50) >consensus AUUCUACAGCAUCAGCCUGCUGGUGCUGAUCUACUUUUUUCGCGACAAUCGCAUCUUCUGGUGGGAGGCGCUCAUCCUGUUCACCAUCUACAUUGCCUAUGUGACCUUCAUGAAGUGGAA ......(((((((((....))))))))).((((((((....(((.....)))......((((((((((.......))).)))))))..(((((.....)))))........)))))))). (-29.11 = -28.78 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:33 2006