Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,727,889 – 9,727,982 |
Length | 93 |
Max. P | 0.792314 |
Location | 9,727,889 – 9,727,982 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 91.85 |
Mean single sequence MFE | -22.11 |
Consensus MFE | -18.00 |
Energy contribution | -17.88 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.59 |
Structure conservation index | 0.81 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.792314 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9727889 93 + 22407834 CAGAGAGAUCGACGACAGUCAGAAACUUGGUUUCGAUUUGGCUGUUUGACAUACUGUCAA-AAGUGGAUGUUGAACAGUACAAAAUAUA--------UAGAG .....((((((((....))).(((((...)))))))))).((((((..(((((((.....-.)))..))))..))))))..........--------..... ( -24.40) >DroSec_CAF1 10198 92 + 1 CAGAGAGAUCGACGACAGUCAGAAACUUGGGUUCGAU-UGGCUGUUUGACAUACUGUCAA-AAGUGGAUGUUGAACAGUACAAAAUAUA--------UAGAG ......((((((...(((........)))...)))))-).((((((..(((((((.....-.)))..))))..))))))..........--------..... ( -21.10) >DroSim_CAF1 9365 92 + 1 CAGAGAGAUCGACGACAGUCAGAAACUUGGGUUCGAU-UGGCUGUUUGACAUACUGUCAA-AAGUGGAUGUUGAACAGUACAAAAUAUA--------UAGAG ......((((((...(((........)))...)))))-).((((((..(((((((.....-.)))..))))..))))))..........--------..... ( -21.10) >DroEre_CAF1 10200 89 + 1 CAGAGAGAUCGA---CAGUCAGAAACUUGGGCUCGAU-UGGCUGUUUGACAUACUGUCAA-AAGUGGAUGUUGAACAGUACAAAAUAUA--------UAGAG ......((((((---..(((.........))))))))-).((((((..(((((((.....-.)))..))))..))))))..........--------..... ( -21.00) >DroYak_CAF1 10464 98 + 1 CAGAGAGAUCGA---CGGUCAGAAACUUGGGUUCGAG-UGGCUGUUUGACAUACCGUCAAAAAGUGGAUGUUGAACAGUACAAAAUAUAUAGUUUUAUAGAG ......(((...---..))).((((((...((.....-..((((((..((((.(((........)))))))..)))))).......))..))))))...... ( -22.94) >consensus CAGAGAGAUCGACGACAGUCAGAAACUUGGGUUCGAU_UGGCUGUUUGACAUACUGUCAA_AAGUGGAUGUUGAACAGUACAAAAUAUA________UAGAG .......(((((...(((........)))...)))))...((((((..((((.(((........)))))))..))))))....................... (-18.00 = -17.88 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:32 2006