Locus 3355

Sequence ID 2L_DroMel_CAF1
Location 9,726,250 – 9,726,360
Length 110
Max. P 0.782352
window5319

overview

Window 9

Location 9,726,250 – 9,726,360
Length 110
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 92.85
Mean single sequence MFE -23.77
Consensus MFE -21.06
Energy contribution -21.08
Covariance contribution 0.03
Combinations/Pair 1.04
Mean z-score -1.47
Structure conservation index 0.89
SVM decision value 0.56
SVM RNA-class probability 0.782352
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9726250 110 + 22407834
CAGAAACAGUAAUUGGGUAAGAGCAGCAGAAGUGGAAGGAUGAGCGAAAGUAACUUCUGGCUGGCAAGUCAAACAUCCAAUUAGAAGGAAUACUGAAUUUACACAGAAUU
........((((((.((((....((((((((((..........((....)).)))))).))))............(((........))).)))).)).))))........ ( -22.00)
>DroSec_CAF1 8555 109 + 1
CAGAAACAGUAAUUGGGUA-GAGCAGCAGAAGUGGAAGGAUGAGCGAAAGUAACUUCUGGCUGGCAAGUCAAACAUCCAAUUAGAAGGAAUACUGAAUUUACACAGAAUU
......(((((.((((.(.-(..((((((((((..........((....)).)))))).)))).).).))))...(((........))).)))))............... ( -22.90)
>DroSim_CAF1 7714 109 + 1
CAGAAACAGUAAUUGGGUA-GAGCAGCAGAAGUGGAAGGAUGAGCGAAAGUAACUUCUGGCUGGCAAGUCAAACAUCCAAUUAGAAGGAAUACUGAAUUUACACAGAAUU
......(((((.((((.(.-(..((((((((((..........((....)).)))))).)))).).).))))...(((........))).)))))............... ( -22.90)
>DroEre_CAF1 8606 103 + 1
CA------GUAAUUGGGUA-GAGCAGCAGAAGUGGAAGGAUGAGCGAAAGUAACUUCUGGCUGGCAAGGCAAACAUCCAAUUAGAAGGAAUACUGAAUUUACACAGAAAU
..------.(((((((((.-...((((((((((..........((....)).)))))).))))((...))....))))))))).........(((........))).... ( -22.90)
>DroYak_CAF1 8823 109 + 1
CAGAAAGAGUAAUUGGAUA-GAGCCGCAGAAGUGGAAGGAUGAGCGAAAGUUACUUCUGGCUGGCAAGGCAAACAUCCAAUUAGAAGGAAUACUGAAUUUACACAGAGUU
.........(((((((((.-..(((((...((((((((....(((....))).))))).))).))..)))....))))))))).........(((........))).... ( -26.50)
>DroAna_CAF1 8356 103 + 1
------CAGUAAUUGGGUA-GGGCAGCAGAAGUGGAAGGAUGAGCGAAAGUAACUUCUGGCUGGCAAGUCAAACAUCCAAUUAGUAGGAACACUGAAUGUACACAGAGUU
------.(.(((((((((.-.(.((((((((((..........((....)).)))))).)))).)..(.....)))))))))).)...(((.(((........))).))) ( -25.40)
>consensus
CAGAAACAGUAAUUGGGUA_GAGCAGCAGAAGUGGAAGGAUGAGCGAAAGUAACUUCUGGCUGGCAAGUCAAACAUCCAAUUAGAAGGAAUACUGAAUUUACACAGAAUU
.........(((((((((.....((((((((((..........((....)).)))))).))))....(.....)))))))))).........(((........))).... (-21.06 = -21.08 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:31 2006