| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,717,671 – 9,717,787 |
| Length | 116 |
| Max. P | 0.816359 |
| Location | 9,717,671 – 9,717,787 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.93 |
| Mean single sequence MFE | -35.09 |
| Consensus MFE | -22.05 |
| Energy contribution | -22.33 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.816359 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9717671 116 - 22407834 UCACCAUUCCCC-A-CUCC--UCGCCAGACUGCCGAUACCGUGGCUGCUGUACGGCAUCAUCUAUGGGGCGCCCGUCGAGGUGAACUCGGUGGGCAUGGUCUGCUCCAUAACCAUCCUGU ..(((((.((((-(-....--((....)).(((((.(((.((....)).)))))))).......))))).((((..((((.....))))..))))))))).................... ( -39.80) >DroVir_CAF1 625 101 - 1 ------------------GA-UAUGUAGCCUACCGAUACCCUGGCUGAUCUAUGGGAUUAUCUACGAUGCGCCCGUUGAAGUGAACUCGGUGGGCAUGGUCUGUUCCAUAACCAUAUUGU ------------------((-((((..(((((((((.....(.(((..((.(((((..((((...))))..))))).))))).)..)))))))))((((......))))...)))))).. ( -32.70) >DroPse_CAF1 150 99 - 1 ---------------------UUUCAAGCUUACCGAUUCCCUGGCUGCUCUAUGGCAUCAUCUACGGUGCGCCCGUUGAGGUGAACUCGGUGGGCAUGGUGUGUUCCAUAACCAUUUUGU ---------------------......((((((((((((((((((.((.(..(((......)))..).))))).....))).))).)))))))))((((((((...))).)))))..... ( -31.90) >DroWil_CAF1 747 100 - 1 ------------------A--AUAUUAGAUUACCUAUACCCUGGCUACUCUAUGGCAUUAUCUAUGAUGCUCCAGUUGAGGUUAACUCGGUGGGCAUGGUCUGUUCCAUUACCAUCUUGU ------------------.--......((..((((.....((((.........(((((((....)))))))))))...))))....))(((((..((((......))))..))))).... ( -24.50) >DroYak_CAF1 150 111 - 1 -------UGCCCCACAUCC--CCGCCAGCCUGCCGAUACCGUGGCUGCUGUACGGCAUCAUCUAUGGGGCGCCCGUCGAGGUGAACUCGGUGGGCAUGGUCUGCUCCAUAACCAUCCUGU -------.((((((.....--(((.((((..((((......)))).))))..))).........))))))((((..((((.....))))..))))((((......))))........... ( -45.24) >DroAna_CAF1 150 113 - 1 -----AUAACCA-A-UUCCAUUUGACAGCUUGCCGAUCCCAUGGCUGCUCUACGGUAUUAUCUAUGGGGCACCAGUGGAGGUGAACUCGGUGGGCAUGGUUUGCUCCAUAACCAUCUUGU -----.....((-(-......)))((((((..(((((((..(((.(((((((..(......)..))))))))))..))).(....)))))..)))((((((........))))))..))) ( -36.40) >consensus __________________C__UUGCCAGCCUACCGAUACCCUGGCUGCUCUACGGCAUCAUCUAUGGGGCGCCCGUUGAGGUGAACUCGGUGGGCAUGGUCUGCUCCAUAACCAUCUUGU ...........................(((((((((.......((((.....)))).((((((((((.....))))..))))))..)))))))))((((......))))........... (-22.05 = -22.33 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:28 2006