Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,714,155 – 9,714,254 |
Length | 99 |
Max. P | 0.516509 |
Location | 9,714,155 – 9,714,254 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 97.98 |
Mean single sequence MFE | -19.52 |
Consensus MFE | -16.62 |
Energy contribution | -17.06 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.47 |
Structure conservation index | 0.85 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516509 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9714155 99 + 22407834 UUAUAUAUAUGUGUUUCUUGUAUAUAUUUCCUCUUAUUUACGUUGCUUUAAAGCGAGACUUCAACGCCAUUCGACAAUUUUGUGUGGUGUGCGCGCUUU .((((((((.(.....).)))))))).......................((((((.(......(((((((.(((.....))).))))))).).)))))) ( -19.00) >DroSec_CAF1 5099 99 + 1 UUAUAUAUAUAUGUUUCUUGUAUAUAUUUCCUCUUAUUUACGUUGCUUUAAAGCGAGACUUCAACGCCAUUCGACAAUUUUGUGUGGUGUGUGCGCUUU ..(((((((((.......)))))))))......................((((((..((....(((((((.(((.....))).))))))))).)))))) ( -19.60) >DroSim_CAF1 5086 99 + 1 UUAAAUAUAUAUGUUUCUUGUAUAUAUUUCCUCUUAUUUACGUUGCUUUAAAGCGAGACUUCAACGCCAUUCGACAAUUUUGUGUGGUGUGUGCGCUUU ..(((((((((((.....)))))))))))....................((((((..((....(((((((.(((.....))).))))))))).)))))) ( -20.40) >DroEre_CAF1 5108 99 + 1 UUAUAUAUAUAUGUUUCUUGUAUAUAUUUCCUCUUAUUUACGUUGCUUUAAAGCGAGACUUCAACGCCAUUCGACAAUUUGGUGUGGUGUGUGCGCUUU ..(((((((((.......)))))))))......................(((((((.((.(((.(((((..........)))))))).)).).)))))) ( -20.00) >DroYak_CAF1 5161 99 + 1 UUAUAUAUAUAUGUUUCUUGUAUAUAUUUCCUCUUAUUUACGUUGCUUUAAAGCGAGACUUCAACGCCAUUCGACAAUUUUGUGUGUUGUGUGCGCUUU ..(((((((((.......)))))))))......................((((((..((..((((((((...........)).)))))).)).)))))) ( -18.60) >consensus UUAUAUAUAUAUGUUUCUUGUAUAUAUUUCCUCUUAUUUACGUUGCUUUAAAGCGAGACUUCAACGCCAUUCGACAAUUUUGUGUGGUGUGUGCGCUUU ..(((((((((.......)))))))))......................((((((........(((((((.(((.....))).)))))))...)))))) (-16.62 = -17.06 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:27 2006