Locus 3351

Sequence ID 2L_DroMel_CAF1
Location 9,713,927 – 9,714,021
Length 94
Max. P 0.899500
window5314

overview

Window 4

Location 9,713,927 – 9,714,021
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 99.15
Mean single sequence MFE -11.50
Consensus MFE -11.01
Energy contribution -11.21
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.54
Structure conservation index 0.96
SVM decision value 1.01
SVM RNA-class probability 0.899500
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9713927 94 - 22407834
CGUAAGGAAGGUAAUAAUAAUAACGAUAAAACGAAACAGAACAAACCAAAUCGAAUCGAAAGAUAUAGUAAUGCUAUAUAUACUUUAUGAAAUA
(((((((..(((...........((......))...........)))........((....))(((((.....)))))....)))))))..... ( -12.05)
>DroSec_CAF1 4873 94 - 1
CGUAAGAAAGGUAAUAAUAAUAACGAUAAAACGAAACAGAACAAACCAAAUCGAAUCGAAAGAUAUAGUAAUGCUAUAUAUACUUUAUGAAAUA
.......((((((..........((((....(((................))).))))....((((((.....)))))).))))))........ (  -9.29)
>DroSim_CAF1 4860 94 - 1
CGUAAGGAAGGUAAUAAUAAUAACGAUAAAACGAAACAGAACAAACCAAAUCGAAUCGAAAGAUAUAGUAAUGCUAUAUAUACUUUAUGAAAUA
(((((((..(((...........((......))...........)))........((....))(((((.....)))))....)))))))..... ( -12.05)
>DroEre_CAF1 4876 94 - 1
CGUAAGGAAGGUAAUAAUAAUAACGAUAAAACGAAACAGAACAAACCAAAUCGAAUCGAAAGAUAUAGUAAUGCUAUAUAUACUUUAUGAAAUA
(((((((..(((...........((......))...........)))........((....))(((((.....)))))....)))))))..... ( -12.05)
>DroYak_CAF1 4922 94 - 1
CGUAAGGAAGGUAAUAAUAAUAACGAUAAAACGAAACAGAGCAAACCAAAUCGAAUCGAAAGAUAUAGUAAUGCUAUAUAUACUUUAUGAAAUA
(((((((..(((...........((......))...........)))........((....))(((((.....)))))....)))))))..... ( -12.05)
>consensus
CGUAAGGAAGGUAAUAAUAAUAACGAUAAAACGAAACAGAACAAACCAAAUCGAAUCGAAAGAUAUAGUAAUGCUAUAUAUACUUUAUGAAAUA
(((((((..(((...........((......))...........)))........((....))(((((.....)))))....)))))))..... (-11.01 = -11.21 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:26 2006