Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,711,826 – 9,711,967 |
Length | 141 |
Max. P | 0.990908 |
Location | 9,711,826 – 9,711,932 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 92.09 |
Mean single sequence MFE | -23.80 |
Consensus MFE | -21.20 |
Energy contribution | -21.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.53 |
Structure conservation index | 0.89 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.932747 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9711826 106 + 22407834 UUGAGUGUCUGCUUGAGUGAUUCUUCUGAGCUUUCAAAGCCUUGUUAACGGUUCGAUGUAAAUGUAUCUGUAUCUGCAUUUGCAUCUGCAUCUUGCAGCUGCAUCU ....(((.((((..((((.........(((((..(((....))).....)))))((((((((((((........)))))))))))).)).))..)))).))).... ( -27.30) >DroSec_CAF1 2822 93 + 1 UUGAGUGUCUGCUUGAGUGAUUCUUCUGAGCUUUCAAAGCCUUGUUAACGGUUCGAUGUAAAUGUAUCUGUAUCUGCAUUUGCAUCUGC-------------AUCC (((((.....(((((((......))).)))).)))))((((........)))).((((((((((((........))))))))))))...-------------.... ( -21.20) >DroSim_CAF1 2815 93 + 1 UUGAGUGUCUGCUUGAGUGAUUCUUCUGAGCUUUCAAAGCCUUGUUAACGGUUCGAUGUAAAUGUAUCUGUAUCUGCAUUUGCAUCUGC-------------AUCU (((((.....(((((((......))).)))).)))))((((........)))).((((((((((((........))))))))))))...-------------.... ( -21.20) >DroEre_CAF1 2811 99 + 1 UUGAGUGUCUGCUUGAGUAAUUCUUCUGAGCUUUCAAAGCCUUGUUAACGGUUCGAUGUAAAUGUAUCUGCAUCUGCAUUUGCAUCUGCAUC-UGC------AUCU (((((.....(((((((......))).)))).)))))((((........)))).((((((.(((((..((((........))))..))))).-)))------))). ( -23.90) >DroYak_CAF1 2823 99 + 1 UUGAGUGUCUGCUUGAGUAAUUCUUCUGAGCUUUCAAAGCCUUGUUAACGGUUCGAUGUAAAUGUAUCUGUAUCUGCAUUUGCAUCUGCAUU-UGC------AUCU (((((.....(((((((......))).)))).)))))((((........)))).((((((((((((..((((........))))..))))))-)))------))). ( -25.40) >consensus UUGAGUGUCUGCUUGAGUGAUUCUUCUGAGCUUUCAAAGCCUUGUUAACGGUUCGAUGUAAAUGUAUCUGUAUCUGCAUUUGCAUCUGCAU__UGC______AUCU (((((.....(((((((......))).)))).)))))((((........)))).((((((((((((........)))))))))))).................... (-21.20 = -21.20 + -0.00)
Location | 9,711,866 – 9,711,967 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 89.31 |
Mean single sequence MFE | -25.76 |
Consensus MFE | -20.76 |
Energy contribution | -20.76 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.56 |
Structure conservation index | 0.81 |
SVM decision value | 2.24 |
SVM RNA-class probability | 0.990908 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9711866 101 + 22407834 CUUGUUAACGGUUCGAUGUAAAUGUAUCUGUAUCUGCAUUUGCAUCUGCAUCUUGCAGCUGCAUCUC-----GCAUCCUGCAUCUGAGUGUGGUUUGUUGUAUAUU .....((((((..(((((((((((((........)))))))))))).(((((.(((((.(((.....-----)))..)))))...)).))))..))))))...... ( -28.20) >DroSec_CAF1 2862 88 + 1 CUUGUUAACGGUUCGAUGUAAAUGUAUCUGUAUCUGCAUUUGCAUCUGC-------------AUCCC-----GCAUCCUGCAUCUGAGUGUGGUUUGUUGUAUAUU ..............((((((((((((........)))))))))))).((-------------(..((-----(((..(.......)..)))))..)))........ ( -24.40) >DroSim_CAF1 2855 88 + 1 CUUGUUAACGGUUCGAUGUAAAUGUAUCUGUAUCUGCAUUUGCAUCUGC-------------AUCUC-----GCAUCCUGCAUCUGAGUGUGGUUUGUUGUAUAUU ..............((((((((((((........))))))))))))(((-------------(....-----(((..(..(((....)))..)..))))))).... ( -22.30) >DroEre_CAF1 2851 94 + 1 CUUGUUAACGGUUCGAUGUAAAUGUAUCUGCAUCUGCAUUUGCAUCUGCAUC-UGC------AUCUA-----GCAUCCUGCAUCUGAGUGUGGUUUGUUGUAUAUU ..............((((((.(((((..((((........))))..))))).-)))------)))((-----(((..(..(((....)))..)..)))))...... ( -25.60) >DroYak_CAF1 2863 99 + 1 CUUGUUAACGGUUCGAUGUAAAUGUAUCUGUAUCUGCAUUUGCAUCUGCAUU-UGC------AUCUGCAUCUGCAUGCUGCAUCUGAGUGUGGUUUGUUGUAUAUU .......(((.((.((((((.(((((..((((..((((..(((....)))..-)))------)..))))..)))))..)))))).)).)))............... ( -28.30) >consensus CUUGUUAACGGUUCGAUGUAAAUGUAUCUGUAUCUGCAUUUGCAUCUGCAU__UGC______AUCUC_____GCAUCCUGCAUCUGAGUGUGGUUUGUUGUAUAUU ..............((((((((((((........))))))))))))..........................(((..(..(((....)))..)..)))........ (-20.76 = -20.76 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:25 2006