Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,698,774 – 9,698,871 |
Length | 97 |
Max. P | 0.809620 |
Location | 9,698,774 – 9,698,871 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 95.50 |
Mean single sequence MFE | -24.03 |
Consensus MFE | -22.17 |
Energy contribution | -21.77 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.10 |
Mean z-score | -1.28 |
Structure conservation index | 0.92 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.809620 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9698774 97 + 22407834 --AUGUGUGCGAGUUGAUGUGCAUAUGUAUGCGCUUCUGGUUUUACUUCUGCGAUCUCUCUUCAGCGCUCUCUUCGCAGGCACUUUUCCACAUUUCGCA --.....((((((.((..((((((....))))))...(((.......(((((((...................))))))).......))))).)))))) ( -25.05) >DroSec_CAF1 58080 97 + 1 --AUGUGUGCGAGUUAAUGUGCAUAUGUAUGCGCUUCUGGUUUUACUUCUGCGAUCUCUCUUCAGCGCUCUCUUCGCAGGCACUUUUCCACAUUUCGCA --.....((((((.....((((((....))))))...(((.......(((((((...................))))))).......)))...)))))) ( -23.35) >DroSim_CAF1 63891 97 + 1 --AUGUGCGCGAGUUAAUGUGCAUAUGUAUGCGCUUCUGGUUUUACUUCUGCGAUCUCUCUUCAGUGCUCUCUUCGCAGGCACUUUUCCACAUUUCGCA --......(((((.....((((((....))))))...(((.......(((((((...................))))))).......)))...))))). ( -23.55) >DroEre_CAF1 63060 99 + 1 GCAUGUGUGCGAGUUAAUGUGCAUAUGUAUGCGCUUCUGGUUUUACUUUUGCGAUCUCUUUUCGGCGCUCUCUUCGUAGGCACUUUUCCACAUUUCGCA ((..(((((.(((.....((((.((((...(((((...((..(..(....)..)...))....)))))......)))).))))..))))))))...)). ( -24.00) >DroYak_CAF1 58550 97 + 1 --AUGUGUGCGAGUUGAUGUGCAUAUGUAUGCGCUUCUGGGUUUACUUUUGCGAUCUCUCUUCAGCGCUCUCUUCGCAGGCACUUUUCCACAUUUCGCA --.(((.((((((..((.((((....))))(((((...(((.(..(....)..)...)))...)))))))..)))))).)))................. ( -24.20) >consensus __AUGUGUGCGAGUUAAUGUGCAUAUGUAUGCGCUUCUGGUUUUACUUCUGCGAUCUCUCUUCAGCGCUCUCUUCGCAGGCACUUUUCCACAUUUCGCA ........(((((.....((((((....))))))...(((.......(((((((...................))))))).......)))...))))). (-22.17 = -21.77 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:21 2006