Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,694,514 – 9,694,608 |
Length | 94 |
Max. P | 0.774730 |
Location | 9,694,514 – 9,694,608 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 77.63 |
Mean single sequence MFE | -14.44 |
Consensus MFE | -10.12 |
Energy contribution | -9.90 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.15 |
Mean z-score | -1.32 |
Structure conservation index | 0.70 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.774730 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9694514 94 + 22407834 CAACUCUUGAUUGCGUUUCUGUUUUUAGUUUUUCGCAUUUCCCCAC----AAUUUCUA---AACUUUAUGCGGCAUUCGCACGCAGCUCUUGCUUUUGUUU ........((.((((...(((....))).....))))..))...((----((......---.......((((((....)).))))((....))..)))).. ( -14.40) >DroPse_CAF1 76286 90 + 1 -------UCAAAGUUUUUCUCCGUUUAGUUUUUCACUUUUC--UACAGAAAAUUCCCAACGAAUUUUAUGCGGCAUUUGCACGCAUUUUUUGCUCUUGA-- -------(((((((.......((((....(((((.......--....))))).....))))......(((((((....)).))))).....))).))))-- ( -13.00) >DroSec_CAF1 53832 92 + 1 CCACUCUUGAUUGCGUUUCUGUUUUUAGUUUUUCGCAUUUC--CAC----AAUUUCUA---AACUUUAUGCGGCAUUCGCACGCAGCUCUUGCUUUUGUUU ........((.((((...(((....))).....))))..))--.((----((......---.......((((((....)).))))((....))..)))).. ( -14.40) >DroSim_CAF1 59640 92 + 1 CCACUCUUGAUUGCGUUUCUGUUUUUAGUUUUUCGCAUUUC--CAC----AAUUUCUA---AACUUUAUGCGGCAUUCGCACGCAGCUCUUGCUUUUGUUU ........((.((((...(((....))).....))))..))--.((----((......---.......((((((....)).))))((....))..)))).. ( -14.40) >DroEre_CAF1 58738 92 + 1 CCACUCUCGUUUGCGUUUCUGUUUUUAGUUUUUCGCAUUUG--CAC----AAUUUCUA---AACUUUAUGCGGCAAUCGCACGCAGCUCUUGCUUUUGUUU ........((.((((...(((....))).....))))...)--)((----((......---.......((((((....)).))))((....))..)))).. ( -15.70) >DroPer_CAF1 76803 90 + 1 -------UCAAAGUUUUUCUCCGUUUAGUUUUUCACUUUUC--CACAGAAAAUUCCCAACGAAUUUUAUGCGGCAUUUGCACGCAUUUUUCGCUCUUGA-- -------((((...((((((......(((.....)))....--...)))))).......((((....(((((((....)).)))))..))))...))))-- ( -14.72) >consensus CCACUCUUGAUUGCGUUUCUGUUUUUAGUUUUUCGCAUUUC__CAC____AAUUUCUA___AACUUUAUGCGGCAUUCGCACGCAGCUCUUGCUUUUGUUU ...........((((...(((....))).....))))...............................((((((....)).))))................ (-10.12 = -9.90 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:20 2006