| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,686,727 – 9,686,838 |
| Length | 111 |
| Max. P | 0.500000 |
| Location | 9,686,727 – 9,686,838 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 80.30 |
| Mean single sequence MFE | -23.55 |
| Consensus MFE | -16.73 |
| Energy contribution | -16.87 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.71 |
| SVM decision value | -0.08 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9686727 111 - 22407834 AAUACAUGCCGAGACAUAUUUGCGAUUGUUCUUUUUGGCAACAUUUUUGUCAUUGCGUGUAGGUCAAAUGUGUUGCCAAGAUUCCACCUGCCAUCAUUCGGCUG---CUCCUUC ....((.((((((........(((..((....((((((((((((.((((.(.(((....)))).)))).))))))))))))...))..))).....))))))))---....... ( -29.32) >DroSec_CAF1 44686 110 - 1 AAUACAUGCCGAGACAUAUUU-UGAUUGUUCUUUUUGGCAACAUUUUUGUCAUUGCGUGUAGGUCAAAUGUGUUGCCAAGAUUCCACCUGCCACCAUUCCGUUG---CUCCUUC ...(((...(((((....)))-))..)))...((((((((((((.((((.(.(((....)))).)))).))))))))))))........((.((......)).)---)...... ( -21.40) >DroSim_CAF1 50046 110 - 1 AAUACAUGCCGAGACAUAUUU-UGAUUGUUCUUUUUGGCAACAUUUUUGUCAUUGCGUGUAGGUCAAAUGUGUUGCCAAGAUUCCACCUGCCACCAUUCGGUUG---CUCCUUC .......(((((((((.....-....))))..((((((((((((.((((.(.(((....)))).)))).))))))))))))................)))))..---....... ( -25.80) >DroEre_CAF1 50624 110 - 1 UAAAUAUGCCGAGAUAUAUUU-UGAUUGUUCUUUUUGGCAACAUUUUUGUCAUUGCGUGUAGGUCAAACGUGUUGCCGAGAAUCCACCCUCCACCAUUCGUUUG---CUCCUUC .......((((((........-.((....))(((((((((((((.((((.(.(((....)))).)))).)))))))))))))..............))))...)---)...... ( -21.70) >DroYak_CAF1 46091 91 - 1 AAUAUAUG-----------UU-UGAUUGUUCUUUUUGGCAACAUUUUUGUCAUUGCGUGUAGGUCAAAUGUGUUGCCAAGAUUCCACCUGCCACCAUUCUA-----------UC ........-----------..-..........((((((((((((.((((.(.(((....)))).)))).))))))))))))....................-----------.. ( -19.30) >DroAna_CAF1 46672 113 - 1 CAUAUAAGCCCCAGCAUAUUU-UUAUUGUCCGCCGCGGGAAUAUUUUUGACAUUGCCUGUAGGUCAAAGAUGUUGCCAAGAUUCCACCUACCACCUGCCAGCUUAUGCAUAUUA ..(((((((....(((.....-.....((.....))((.((((((((((((.(((....))))))))))))))).))..................)))..)))))))....... ( -23.80) >consensus AAUACAUGCCGAGACAUAUUU_UGAUUGUUCUUUUUGGCAACAUUUUUGUCAUUGCGUGUAGGUCAAAUGUGUUGCCAAGAUUCCACCUGCCACCAUUCGGUUG___CUCCUUC ................................((((((((((((.((((.(.(((....)))).)))).))))))))))))................................. (-16.73 = -16.87 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:17 2006