Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,684,457 – 9,684,547 |
Length | 90 |
Max. P | 0.938050 |
Location | 9,684,457 – 9,684,547 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 86.92 |
Mean single sequence MFE | -18.87 |
Consensus MFE | -18.00 |
Energy contribution | -18.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.75 |
Structure conservation index | 0.95 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.938050 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9684457 90 - 22407834 AAACAAAAACAAAAGCUAAAGCUAAAGUCGCCGCCAAAUGAGGACACUGGUCAUCCAGGUGAGCAGUGUGUGAAAUCCACUGAAGUCCAC .............(((....)))..................((((((((.((((....)))).))))(((.(....))))....)))).. ( -20.60) >DroSec_CAF1 42412 80 - 1 AAAAGAAAACACA----AAAGCAAAAGUCGCCGCCAAAUGAGGACACUGGUCAUCCAGGUGAGCAGUGUGUGAAAUC------AGUCCAC .........(((.----................((......))((((((.((((....)))).))))))))).....------....... ( -18.00) >DroSim_CAF1 47761 78 - 1 AAAAGAAAAAACA------AGCAAAAGUCGCCGCCAAAUGAGGACACUGGUCAUCCAGGUGAGCAGUGUGUGAAAUC------AGUCCAC .............------........((((..((......))((((((.((((....)))).))))))))))....------....... ( -18.00) >consensus AAAAGAAAACACA____AAAGCAAAAGUCGCCGCCAAAUGAGGACACUGGUCAUCCAGGUGAGCAGUGUGUGAAAUC______AGUCCAC ...........................((((..((......))((((((.((((....)))).))))))))))................. (-18.00 = -18.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:16 2006