Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,677,992 – 9,678,099 |
Length | 107 |
Max. P | 0.621753 |
Location | 9,677,992 – 9,678,099 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 93.30 |
Mean single sequence MFE | -21.65 |
Consensus MFE | -20.25 |
Energy contribution | -19.88 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.08 |
Mean z-score | -1.39 |
Structure conservation index | 0.94 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.621753 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9677992 107 - 22407834 GUUGAUAUAAUUUCAUUUGAUCAGGUUACGGUUUGAUCGAAUUGAAUUAACUUACAUUGUUGUUAGCAAUUCAUGUAUUUAAUAAUAGCAAUUUUCUAAGGGCAAGU (((....((((((.(((((((((((......))))))))))).)))))).((((.((((((((((..(((......)))...))))))))))....))))))).... ( -21.90) >DroSec_CAF1 35980 107 - 1 GUUGAUAUAAUUUCAUUUGAUUAGGUUACGGUUUGAUCGAAUUGAAUUAACUUACAUUGUUGUUAGCAAUUCAUGCAUUUAAUAAUAGCAAUUUUCUAAGGGCAAGU (((....((((((.(((((((((((......))))))))))).)))))).((((.(((((((((((((.....)))......))))))))))....))))))).... ( -20.20) >DroSim_CAF1 40868 107 - 1 GUUGAUAUAAUUUUAUUUGAUUAGGUUACGGUUUGAUCGAAUUGAAUUAACUUACAUUGUUGUUAGCAAUUCAUGUAUUUAAUAAUAGCAAUUUUCUAAGGGCAAGU (((....((((((.(((((((((((......))))))))))).)))))).((((.((((((((((..(((......)))...))))))))))....))))))).... ( -19.70) >DroYak_CAF1 37192 107 - 1 GUUGAUUCAAUUUCAUUUGAUCGGGCUAUACUUUGAUCGAAUUGAAUUAACUUACAUUGUUGUUAGUAAUUCAUAUAUUUAAUAAUAGCGAUUUUCUAAGGGCAAGC (((((((((((((.....(((((((......)))))))))))))))))))).....(((((.((((.((.((...((((....))))..)).)).)))).))))).. ( -24.80) >consensus GUUGAUAUAAUUUCAUUUGAUCAGGUUACGGUUUGAUCGAAUUGAAUUAACUUACAUUGUUGUUAGCAAUUCAUGUAUUUAAUAAUAGCAAUUUUCUAAGGGCAAGU (((....((((((.(((((((((((......))))))))))).)))))).((((.((((((((((..(((......)))...))))))))))....))))))).... (-20.25 = -19.88 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:15 2006