Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,670,749 – 9,670,846 |
Length | 97 |
Max. P | 0.800237 |
Location | 9,670,749 – 9,670,846 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 97.11 |
Mean single sequence MFE | -19.88 |
Consensus MFE | -19.46 |
Energy contribution | -19.46 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.22 |
Structure conservation index | 0.98 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.800237 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9670749 97 + 22407834 AAUUUUAAAAUAUUUUUAGAUCCAACUGACAGUUGUGUUCUGUGCUCACCUUUCAGUUAUUACCCGGCCAUUGUUAGCUGUCAUUUGGCCAAAGUAA ..........((((((.......((((((.((.((.((.....)).)).)).)))))).......(((((.((........))..))))))))))). ( -20.00) >DroSec_CAF1 28956 97 + 1 AAUUUCAAAAUAUUUUUAGAUCCAACUGACAGUUGUGUUCUGCGCUCACCUUUCAGUUAUUACCCGGCCAUUGUUAGCUGUCAUUUGGCCAAAGUAA ..........((((((.......((((((.((.((.((.....)).)).)).)))))).......(((((.((........))..))))))))))). ( -19.30) >DroSim_CAF1 30020 97 + 1 AAUUUCAAAAUAUUUUUAGAUCCAACUGACAGUUGUGUUCUGCGCUCACCUUUCAGUUAUUACCCGGCCAUUGUUGGCUGUCAUUUGGCCAAAGUAA ..........((((((.....((((((((.((.((.((.....)).)).)).))))))......((((((....))))))......))..)))))). ( -19.30) >DroEre_CAF1 34710 97 + 1 AAUUUCAAAAUAUUUUUAGAUCCAACUGACAGUUGCGUUCUGCGCUCACCUUUCAGUUAUUACCCGGCCAUUGUUAGCUGUCAUUUGGCCAAAGUAA ..........((((((.......((((((.((..(((.....)))....)).)))))).......(((((.((........))..))))))))))). ( -21.10) >DroYak_CAF1 29253 97 + 1 AAUUUCCAAAUAUUUUUAGAUCCAACUGACAGUUGCGUUCGGUGCUCACCUUUCAGUUAUUACCCGGCCAUUGUUAGCUGUCAUUUGGCCAAAGUAA ..........((((((.......((((((.((.((.((.....)).)).)).)))))).......(((((.((........))..))))))))))). ( -19.70) >consensus AAUUUCAAAAUAUUUUUAGAUCCAACUGACAGUUGUGUUCUGCGCUCACCUUUCAGUUAUUACCCGGCCAUUGUUAGCUGUCAUUUGGCCAAAGUAA ..........((((((.......((((((.((.((.((.....)).)).)).)))))).......(((((.((........))..))))))))))). (-19.46 = -19.46 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:11 2006