Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,009,887 – 1,009,995 |
Length | 108 |
Max. P | 0.888934 |
Location | 1,009,887 – 1,009,995 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -23.27 |
Consensus MFE | -23.27 |
Energy contribution | -23.27 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.95 |
Structure conservation index | 1.00 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888934 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1009887 108 + 22407834 GGUAUCGUUUAAUUUACAUUUAUAUAAUUUACACAUGCAGCAGAAUAUAAUAUGUUUGUGAUUUAAACUUGAAUCUGUAGCGCAUAUUACACAAUGGCGCGAUACAUU .(((((((((((.(((((..(((((.((..................)).)))))..))))).))))))...........((((.((((....)))))))))))))... ( -23.27) >DroSec_CAF1 121620 108 + 1 GGUAUCGUUUAAUUUACAUUUAUAUAAUUUACACAUGCAGCAGAAUAUAAUAUGUUUGUGAUUUAAACUUGAAUCUGUAGCGCAUAUUACACAAUGGCGCGAUACAUU .(((((((((((.(((((..(((((.((..................)).)))))..))))).))))))...........((((.((((....)))))))))))))... ( -23.27) >DroSim_CAF1 122184 108 + 1 GGUAUCGUUUAAUUUACAUUUAUAUAAUUUACACAUGCAGCAGAAUAUAAUAUGUUUGUGAUUUAAACUUGAAUCUGUAGCGCAUAUUACACAAUGGCGCGAUACAUU .(((((((((((.(((((..(((((.((..................)).)))))..))))).))))))...........((((.((((....)))))))))))))... ( -23.27) >consensus GGUAUCGUUUAAUUUACAUUUAUAUAAUUUACACAUGCAGCAGAAUAUAAUAUGUUUGUGAUUUAAACUUGAAUCUGUAGCGCAUAUUACACAAUGGCGCGAUACAUU .(((((((((((.(((((..(((((.((..................)).)))))..))))).))))))...........((((.((((....)))))))))))))... (-23.27 = -23.27 + -0.00)
Location | 1,009,887 – 1,009,995 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -20.30 |
Consensus MFE | -20.30 |
Energy contribution | -20.30 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 1.00 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.783241 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1009887 108 - 22407834 AAUGUAUCGCGCCAUUGUGUAAUAUGCGCUACAGAUUCAAGUUUAAAUCACAAACAUAUUAUAUUCUGCUGCAUGUGUAAAUUAUAUAAAUGUAAAUUAAACGAUACC ...((((((((.((..((((((((((.......((((........)))).....))))))))))..)).)))..((.(((.(((((....))))).))).))))))). ( -20.30) >DroSec_CAF1 121620 108 - 1 AAUGUAUCGCGCCAUUGUGUAAUAUGCGCUACAGAUUCAAGUUUAAAUCACAAACAUAUUAUAUUCUGCUGCAUGUGUAAAUUAUAUAAAUGUAAAUUAAACGAUACC ...((((((((.((..((((((((((.......((((........)))).....))))))))))..)).)))..((.(((.(((((....))))).))).))))))). ( -20.30) >DroSim_CAF1 122184 108 - 1 AAUGUAUCGCGCCAUUGUGUAAUAUGCGCUACAGAUUCAAGUUUAAAUCACAAACAUAUUAUAUUCUGCUGCAUGUGUAAAUUAUAUAAAUGUAAAUUAAACGAUACC ...((((((((.((..((((((((((.......((((........)))).....))))))))))..)).)))..((.(((.(((((....))))).))).))))))). ( -20.30) >consensus AAUGUAUCGCGCCAUUGUGUAAUAUGCGCUACAGAUUCAAGUUUAAAUCACAAACAUAUUAUAUUCUGCUGCAUGUGUAAAUUAUAUAAAUGUAAAUUAAACGAUACC ...((((((((.((..((((((((((.......((((........)))).....))))))))))..)).)))..((.(((.(((((....))))).))).))))))). (-20.30 = -20.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:16 2006