Locus 3338

Sequence ID 2L_DroMel_CAF1
Location 9,667,817 – 9,667,916
Length 99
Max. P 0.766061
window5294

overview

Window 4

Location 9,667,817 – 9,667,916
Length 99
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 90.10
Mean single sequence MFE -29.33
Consensus MFE -24.34
Energy contribution -25.18
Covariance contribution 0.84
Combinations/Pair 1.17
Mean z-score -2.12
Structure conservation index 0.83
SVM decision value 0.52
SVM RNA-class probability 0.766061
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9667817 99 - 22407834
CAAGCGGGCUCAACAACACAAAAAGCCGAAGCUGCAAAAAUUCAGCCAUGCUGA------AAGUUUCUGUUGACGUCGUCGUCAACAUAGUUGGCAGUUUUGUUG
..(((.((((.............))))((((((((.....((((((...)))))------)......((((((((....))))))))......))))))))))). ( -31.32)
>DroSec_CAF1 26101 99 - 1
CAAGCGGGCUCAACAACACAAAAAGCCGAAGCUGCAAAAAUUCAGCCAUGCUGA------AAGUUUCUGUUGACGUCGUCGACAACAUAGUUGGCAGUUUUGUUG
..(((.((((.............))))((((((((.....((((((...)))))------)......(((((((...))))))).........))))))))))). ( -27.22)
>DroSim_CAF1 27144 99 - 1
CAAGCGGGCUCAACAACACAAAAAGCCGAAGCUGCAAAAAUUCAGCCAUGCUGA------AAGUUUCUGUUGACGUCGUCGUCAACAUAGUUGGCAGUUUUGUUG
..(((.((((.............))))((((((((.....((((((...)))))------)......((((((((....))))))))......))))))))))). ( -31.32)
>DroEre_CAF1 31716 99 - 1
CAAGCGGGCUUAACAACACAAAAAGCCGAAGCUGCAAAAAUUCAGCCAUGCUGA------AAGUUUCUGUUGACGUCGUCGUCAACAUAGUUGGCAGUUUUGUUG
..(((.(((((...........)))))((((((((.....((((((...)))))------)......((((((((....))))))))......))))))))))). ( -32.70)
>DroYak_CAF1 26300 99 - 1
CAAGCGGGCUCAACAACACAAAAAGCCGAAGCUGCAAAAAUUCAGCCAUGCUGA------AAGUUUCUGUUGACGUCGUCGUCAACAUAGUUGGCAGUUUUGUUG
..(((.((((.............))))((((((((.....((((((...)))))------)......((((((((....))))))))......))))))))))). ( -31.32)
>DroAna_CAF1 28739 101 - 1
CAAGCGGCCUCAACAACACUCAAAGUCGAUGCUGCAAAAAUCCAGCGAAGCUGAAACUGAAACUUUCUGUUGACGUCG---UUAGCAUAGU-GGUGGCCAUACUG
.....((((.(.((...............(((((........)))))..(((((......(((.....))).......---)))))...))-.).))))...... ( -22.12)
>consensus
CAAGCGGGCUCAACAACACAAAAAGCCGAAGCUGCAAAAAUUCAGCCAUGCUGA______AAGUUUCUGUUGACGUCGUCGUCAACAUAGUUGGCAGUUUUGUUG
.............(((((.(((..(((((((((........(((((...))))).......))))))((((((((....)))))))).....)))..)))))))) (-24.34 = -25.18 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:06 2006