Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,662,710 – 9,662,803 |
Length | 93 |
Max. P | 0.975524 |
Location | 9,662,710 – 9,662,803 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 79.41 |
Mean single sequence MFE | -39.55 |
Consensus MFE | -23.75 |
Energy contribution | -24.75 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.13 |
Mean z-score | -3.04 |
Structure conservation index | 0.60 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975524 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9662710 93 + 22407834 UCCU---------U-CUGCUUUCUCCGCU-GCGGUACCAACUAUCAGUGGUGAGUGAAAAUCGCUGAUGCGUGGCGCGGAAAAUGGAAGGAGCUG----GAAGGCGUG .(((---------(-((((((..((((((-(((.(((....((((((((((........)))))))))).))).)))))....))))..)))).)----))))).... ( -39.70) >DroSec_CAF1 20856 93 + 1 UCUU---------U-CUGCUUUCUCCGCU-GCGGUGCCAACUAUCAGUGGUGAGUGAAAAUCGCUGAUGCGUGGCGCGGAAAAUGGAUGGAGAUG----GAAGGCGAG .(((---------(-((((((..((((..-.(.((((((..((((((((((........))))))))))..)))))).)....))))..))).))----))))).... ( -37.70) >DroSim_CAF1 21647 93 + 1 UCUU---------U-CGGCUUUCUCCGCU-GCGGUGCCAACUAUCAGUGGUGAGUGAAAAUCGCUGAUGCGUGGCGCGGAAAAUGGAAGGAGAUG----GAAGGCGAG ((((---------(-((.(((..((((..-.(.((((((..((((((((((........))))))))))..)))))).)....))))..))).))----))))).... ( -39.20) >DroEre_CAF1 20701 102 + 1 UUUCUCCGCUUUCU-CCGCUUUCUGCGCU-GCGGUGCCAACUAUCAGUGGUGAGUGAAAAUCGCUGAUGCGUGGCGCGGAAAAUGGAUGGGGAUG----UGUGGUAAG .....((((..(((-(((((((((((((.-.((((....))((((((((((........))))))))))))..))))))))...)).))))))..----.)))).... ( -43.90) >DroYak_CAF1 20969 102 + 1 CUUCGCCGCUUUCC-CUGCUUUCUGCGCU-GCGGUGCCAACUAUCAGUGGUGAGUGAAAAUCGCUGAUGCGUGGCGCGGAAAAUGGCAGGAGAUG----GGAGGAGAG ((((.((.(.(..(-(((((((((((((.-.((((....))((((((((((........))))))))))))..))))))))...))))))..).)----)).)))).. ( -47.90) >DroAna_CAF1 23674 104 + 1 UUU--UCGCUUUUUAGGGCUUUCUACAGUGGCGGUGCCAACUAUCAGUGUUGAGUGAAAAUCGCUGAUGCGUGUU--GGAGGAUAGAGGGAGACAUCUGAAGGGAGAG ...--((.(((((((((.((..((....((((...)))).(((((.(((((.((((.....))))))))).....--....)))))))..))...))))))))).)). ( -28.90) >consensus UCUU_________U_CUGCUUUCUCCGCU_GCGGUGCCAACUAUCAGUGGUGAGUGAAAAUCGCUGAUGCGUGGCGCGGAAAAUGGAAGGAGAUG____GAAGGCGAG ..................((((((.......(.((((((..((((((((((........))))))))))..)))))).).....)))))).................. (-23.75 = -24.75 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:01 2006