| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,640,843 – 9,640,957 |
| Length | 114 |
| Max. P | 0.958404 |
| Location | 9,640,843 – 9,640,957 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 75.87 |
| Mean single sequence MFE | -19.67 |
| Consensus MFE | -15.61 |
| Energy contribution | -15.17 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.958404 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9640843 114 + 22407834 UUUUGUCUGGUUCAUCUUUUGAACUCUUUUACGGUAUAGUUAAUGCAUAUAUUUAAUUCAGUUGACUUUCACCAAAAUCUUUUU-UGAGUCAGCAAUAUGCCAGCACUGUUAGAG .....(((((((((.....)))))........((((((((....))..............(((((((.....(((((....)))-)))))))))..))))))........)))). ( -22.60) >DroSec_CAF1 41397 114 + 1 UUGCGCCUGGUUCAUCUUUUGAACUCUUUUACUUUAUAGUUAAUGCAUUUAUUUAAUUCUGUUGACUUUCACCAAAAUCUUUUU-UAAGUCAGCAUUAUGCCAGCACUGUUAGAA ........((((((.....))))))......((..(((((....((((...........(((((((((................-.)))))))))..))))....))))).)).. ( -18.45) >DroYak_CAF1 43232 90 + 1 UUUCGCCUGGCACAUCUUUUGAACCC-------------------------UUUAAUUCUGUUGACUUUUACCAAAAUCACUUUUCAAGUCAGCAAUAUGCCAGCACUGUUAGAG ....((.(((((..((....))....-------------------------........(((((((((..................)))))))))...))))))).......... ( -17.97) >consensus UUUCGCCUGGUUCAUCUUUUGAACUCUUUUAC__UAUAGUUAAUGCAU_UAUUUAAUUCUGUUGACUUUCACCAAAAUCUUUUU_UAAGUCAGCAAUAUGCCAGCACUGUUAGAG ....(.(((((...((....))......................................((((((((..................)))))))).....)))))).......... (-15.61 = -15.17 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:57 2006