Locus 3331

Sequence ID 2L_DroMel_CAF1
Location 9,638,918 – 9,639,015
Length 97
Max. P 0.688646
window5284

overview

Window 4

Location 9,638,918 – 9,639,015
Length 97
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.69
Mean single sequence MFE -25.92
Consensus MFE -16.22
Energy contribution -16.05
Covariance contribution -0.17
Combinations/Pair 1.16
Mean z-score -2.02
Structure conservation index 0.63
SVM decision value 0.32
SVM RNA-class probability 0.688646
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9638918 97 - 22407834
GGUAAAAAUGUAAUUUUCAAGUGAAGGUGAAGUUGCAGCC--GAGA------------------AACUGGCAG-AAAGUGAACUGCGAA-GGCUCUGGGGCCAA-AGGGCACAUGGAGAA
........((((((((.((........)))))))))).((--.(((------------------..((.((((-........))))..)-)..))).))(((..-..))).......... ( -23.50)
>DroSec_CAF1 39494 97 - 1
GGUAAAAAUGCAAUUUUCAAGUGAAGGUGAAGUUGCAGCC--GAGA------------------AACUGGCAG-AAAGUGAACUGCGAA-GGCUCUGUGGCCAA-AGGGCGCAUGGAGAA
(((.....((((((((.((........)))))))))))))--....------------------..((.((((-........))))..)-).((((((((((..-..))).))))))).. ( -27.80)
>DroSim_CAF1 38791 97 - 1
GGUAAAAAUGCAAUUUUCAAGUGAAGGUGAAGUUGCAGCC--GAGA------------------AACUGGCAG-AAAGUGAACUGCGAA-GGCUCUGGGGCCAA-AGGGCGCAUGGAGAA
........((((((((.((........)))))))))).((--.(((------------------..((.((((-........))))..)-)..))).))(((..-..))).......... ( -25.50)
>DroEre_CAF1 41660 97 - 1
GGUAAAAAUGCAAUUUUCAAGUGAAGGUGAAGUUGCAGCA--CAGA------------------AACUGGCUG-AAAGUGAACUGGUAG-GGCUCUGGGGCCAA-AGGGCACAUGGAGAA
.............((((((.(((..(((..(.((.((((.--(((.------------------..)))))))-.)).)..))).....-((((....))))..-....))).)))))). ( -23.80)
>DroYak_CAF1 41250 103 - 1
GGUAAAAAUGCAAUUUUCAAGUGAAGGUGAAGUUGCAGUUGCCAGUUU----------------CUCUGGCAG-AAAGUGAACUGGUAGGGGCUUUGGGGCCAAAAGGGCACAUGGCGAA
(((((...((((((((.((........)))))))))).))))).....----------------(((((.(((-........))).)))))(((.((..(((.....))).)).)))... ( -32.80)
>DroAna_CAF1 51483 116 - 1
GGUAAAAAUGCAAUUUUCAAGUGAAGGUGAAGUUGCAGUU--GAGUUCCCUGGAACGAGAGCAGAAAUAGCAGCAAAGUGAACUCGGGA-GGCUCUAAGGUGAA-AGGGCAGGAAAAGAA
........(((.((((((....))))))....(..(....--((((..((((........(((....).)).....((....)))))).-.))))....)..).-...)))......... ( -22.10)
>consensus
GGUAAAAAUGCAAUUUUCAAGUGAAGGUGAAGUUGCAGCC__GAGA__________________AACUGGCAG_AAAGUGAACUGCGAA_GGCUCUGGGGCCAA_AGGGCACAUGGAGAA
........((((((((.((........))))))))))........................................(((..((......((((....))))...))..)))........ (-16.22 = -16.05 +  -0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:56 2006