Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,637,225 – 9,637,327 |
Length | 102 |
Max. P | 0.767304 |
Location | 9,637,225 – 9,637,327 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.73 |
Mean single sequence MFE | -17.18 |
Consensus MFE | -12.15 |
Energy contribution | -12.35 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.06 |
Mean z-score | -1.50 |
Structure conservation index | 0.71 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.767304 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9637225 102 + 22407834 -GCAAU-ACCAGGCCAUUUCCUAUUCGUUAUACUC-UUUUUUACCCACCUGCC-UUGGCAAUUCUCAGUUUG--------------CAGCUGAAAAUCACGCCUCUGGCAAUUUUAAUCU -.....-...(((......))).............-.............((((-..(((.(((.(((((...--------------..))))).)))...)))...)))).......... ( -17.00) >DroSec_CAF1 37768 103 + 1 -GCAAU-CCCAGGCCAUUUCCUAUUCGUUAUACUCCAUUUUUACCCGCCUGCC-AUGGCAAUUCUCAGUUUG--------------CAGCUGAAAAUCACGCCUCUAGCAAUUUUAAUCU -((...-..(((((................................)))))..-..(((.(((.(((((...--------------..))))).)))...)))....))........... ( -16.05) >DroSim_CAF1 37068 103 + 1 -GCAAU-CCCAGGCCAUUUCCUAUUCGUUAUACUCCUUUUUUACCCACCUGCC-AUGGCAAUUCUCAGUUUG--------------CAGCUGAAAAUCACGCCUCUGGCAAUUUUAAUCU -.....-...(((......)))...........................((((-(.(((.(((.(((((...--------------..))))).)))...)))..))))).......... ( -17.50) >DroEre_CAF1 39957 86 + 1 CGCAAU-CCCAG---------------UUUUACUC-UUUUU--CCCAUCUGCC-UCGGCAAUUCUCAGUUUG--------------CAGCUGAAAAUCACGCCUCUGGCAAUUUUAAUCU ......-.....---------------........-.....--......((((-..(((.(((.(((((...--------------..))))).)))...)))...)))).......... ( -15.30) >DroYak_CAF1 39484 116 + 1 -GCAAU-CCCAGUCGAUUUCCCAUUCGUUUUACUC-UUUUUUCCCCACCUGCC-UUGGCAAUUCUCAGUUUGCAGUGUGCAGAUUGCAGCUGAAAAUCACGCCUCUGGCAAUUUUAAUCU -.....-......(((........)))........-.............((((-..(((.(((.((((((.(((((......))))))))))).)))...)))...)))).......... ( -23.70) >DroAna_CAF1 49973 101 + 1 -GCAUUUCCCAACCCAU-CGUUGCUCAAUUUCCAC-U--UUUUCACACCUGCCCUUGCCAGUUCUCAGUUUA--------------CAGCUGAAAAUCACGCCUCUGGCAAUUUUAAUCU -........((((....-.))))............-.--...............(((((((...(((((...--------------..)))))...........)))))))......... ( -13.54) >consensus _GCAAU_CCCAGGCCAUUUCCUAUUCGUUAUACUC_UUUUUUACCCACCUGCC_UUGGCAAUUCUCAGUUUG______________CAGCUGAAAAUCACGCCUCUGGCAAUUUUAAUCU .................................................((((...(((.(((.((((((.................)))))).)))...)))...)))).......... (-12.15 = -12.35 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:55 2006