Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,636,666 – 9,636,786 |
Length | 120 |
Max. P | 0.995140 |
Location | 9,636,666 – 9,636,786 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.89 |
Mean single sequence MFE | -27.37 |
Consensus MFE | -24.80 |
Energy contribution | -25.32 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.06 |
Mean z-score | -2.32 |
Structure conservation index | 0.91 |
SVM decision value | 2.55 |
SVM RNA-class probability | 0.995140 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9636666 120 + 22407834 AACGUUUAAACCAAAUUUGCAUAAUAGUUCUUCUUUCCGUUCACUGCAAAUGUGCGAAAGAGCAACUGGCAUCAAAAUCUAAGUGAGCAUUGCCAAAUUAUGCAAAUGUUUGCCAAACUG ...((((.......(((((((((((((((.(((((((....(((.......))).))))))).))))((((......((.....))....))))..))))))))))).......)))).. ( -29.64) >DroSec_CAF1 37211 120 + 1 AACGUUUAAACCAAAUUUGCAUAAUAGUUCUUCUUUCCGUUCACUGCAAAUGUGCGAAAGAGCAACUGGCAUCAAAAUCUAAGUGAGCAUUGCCAAAUUAUGCAAAUGUUUGCCAAACUG ...((((.......(((((((((((((((.(((((((....(((.......))).))))))).))))((((......((.....))....))))..))))))))))).......)))).. ( -29.64) >DroSim_CAF1 36495 120 + 1 AACGUUUAAACCAAAUUUGCAUAAUAGUUCUUCUUUCCGUUCACUGCAAAUGUGCGAAAGAGCAACUGGCAUCAAAAUCUAAGUGAGCAUUGCCAAAUUAUGCAAAUGUUUGCCAAACUG ...((((.......(((((((((((((((.(((((((....(((.......))).))))))).))))((((......((.....))....))))..))))))))))).......)))).. ( -29.64) >DroEre_CAF1 39440 120 + 1 AACGCUUAAACCAAAUUUACAUAAUAGUUCUUCUUACCGUUCACUGCAAAUGUGCCAAAGAGCAACUGGCAUCAGAAUCUAAGUGAGCAUUGCCAAAUUAUGCAAAUGUUUGCCAAACUG ......(((((...((((.((((((.((.......)).(((((((.....(((((((.........))))).)).......)))))))........)))))).)))))))))........ ( -20.30) >DroYak_CAF1 39027 120 + 1 AACGCUUAAACCAAAUUUGCAUAAUAGUUCUUCUUUCCGUUCACUGCAAAUGUGCGAAAGAGCAACUGGCAUCAGAAUCUAAGUGAGCAUUGCCAAAUUAUGCAAAUGUUUGCCAAACUG ......(((((...(((((((((((((((.(((((((....(((.......))).))))))).))))((((......((.....))....))))..))))))))))))))))........ ( -28.80) >DroAna_CAF1 49405 101 + 1 AACGUUUAAACCAAAUUUGCAUAAUAGUUCUUCUUU------------------UGAGGGAGCAACUGGCAUCAAAAUCUAAGUGAGCAUUGCCAAAUUAUGCAAAUGUUUGC-GAACUG ..(((..((((...((((((((((((((((((((..------------------...))))).))))((((......((.....))....))))..)))))))))))))))))-)..... ( -26.20) >consensus AACGUUUAAACCAAAUUUGCAUAAUAGUUCUUCUUUCCGUUCACUGCAAAUGUGCGAAAGAGCAACUGGCAUCAAAAUCUAAGUGAGCAUUGCCAAAUUAUGCAAAUGUUUGCCAAACUG ......(((((...(((((((((((((((.(((((((....(((.......))).))))))).))))((((......((.....))....))))..))))))))))))))))........ (-24.80 = -25.32 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:54 2006