Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,630,253 – 9,630,372 |
Length | 119 |
Max. P | 0.919985 |
Location | 9,630,253 – 9,630,372 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.23 |
Mean single sequence MFE | -28.59 |
Consensus MFE | -21.87 |
Energy contribution | -22.67 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -2.22 |
Structure conservation index | 0.77 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919985 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9630253 119 + 22407834 UUUUUAAAGGACCUAAUUUUAAUAGCUCCUCAGUCCUUUGCCCAUAAUUAGCGU-CCCUUUAACUUUAUGGGCUUUUAAUUGAAAUGCCAAAAUGGAAACAGCGACAAGGAGCAAUACUU ........................((((((..(((....((((((((.......-..........))))))))....................((....))..))).))))))....... ( -26.53) >DroSec_CAF1 30888 119 + 1 UUUUUAAAGGACAUAAUUUGAAUAGCUCCUCAGUCCUUUUCCCAUAAUUAGCGA-CCCUUCAACUUUAUGGGCUUUUAAUUGAAAUGCCAAAAUGGAAACAGCGACAAGGAGCAAUACCU .......(((.((.....))....((((((..(((((((((((((((.....((-....))....)))))(((((((....)))).))).....))))).)).))).))))))....))) ( -26.50) >DroSim_CAF1 30127 119 + 1 UUUUUAAAGGACAUAAUUUUAAUAGCUCCUCAGUCCUUUGCCCAUAAUUAGCGA-CCCUUCAACUUUAUGGGCUUUUAAUUGAAAUGCCAAAAUGGAAACAGCGACAAGGAGCAAUACCU ........................((((((..(((....((((((((.....((-....))....))))))))....................((....))..))).))))))....... ( -26.60) >DroEre_CAF1 33036 119 + 1 UGUUUUAGGGACAUCAUUUGCAGAGCUCC-CAUUUUCUUGCCCAUAAUUAGCGACCCCUUCAACUUUAUGGGCUUUUAAUUGAAAUGCCAAAGUGGAAACACGGGCAAGGAGCAAUACCU ......((((.((.....)))...(((((-((.((....((((((((.....((.....))....))))))))....)).))...((((...(((....))).)))).)))))....))) ( -34.80) >DroYak_CAF1 32469 120 + 1 UUUUUGAAGGACACAAUUUUAAUAGCUCCUCAUUUUGUUGCCCAUAAUUAGCGAGCCCUUCAACUUUAUGGGCUUUUAAUUGAAAUGGCAAAAUGAAAACAGCGACAAGGAGCAAUACCU ........................((((((.....((((((((((((((((.((((((...........))))))))))))...)))).....((....))))))))))))))....... ( -28.50) >consensus UUUUUAAAGGACAUAAUUUUAAUAGCUCCUCAGUCCUUUGCCCAUAAUUAGCGA_CCCUUCAACUUUAUGGGCUUUUAAUUGAAAUGCCAAAAUGGAAACAGCGACAAGGAGCAAUACCU ........................((((((((((.....((((((((..................)))))))).....)))))..........((....)).......)))))....... (-21.87 = -22.67 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:48 2006