Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,624,104 – 9,624,205 |
Length | 101 |
Max. P | 0.790472 |
Location | 9,624,104 – 9,624,205 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 79.73 |
Mean single sequence MFE | -25.52 |
Consensus MFE | -13.08 |
Energy contribution | -15.32 |
Covariance contribution | 2.24 |
Combinations/Pair | 1.05 |
Mean z-score | -2.14 |
Structure conservation index | 0.51 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.790472 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9624104 101 + 22407834 AACGGCGAUGGCCCGCAUUAAGCCAUUAAAGCUAAUUAAACCCAGCCGCCCUGGGG-ACCAGGCUAACGCCAUCAAUCCUCCCAUUUAAUGCCCGUUCCCAU- ...((.(((((...((((((((..................(((((.....))))).-....(((....))).............))))))))))))).))..- ( -28.50) >DroSec_CAF1 24690 101 + 1 AACGGCGAGGGCCCGCAUUAGGCCAUUAAAGCUAAUUAAACCCAGCCGCCCUGGGG-CCCAGGCUAACGCCAUCAAUCCUCCCAUUUAAUGCCCGUUCCCAU- (((((((.((((((((.((((....)))).))..........(((.....))))))-))).(((....)))..................)).))))).....- ( -30.20) >DroSim_CAF1 23913 79 + 1 AACGGCGAUGGCCCGCAUUAAGCCAUUAAAGCUAAUUAAACCCAGCCGCCCCGGGG-CCCAGGCUA----------------------AUGCCCGUUACCAU- ...((..((((...((((((.(((......(((..........))).(((....))-)...)))))----------------------))))))))..))..- ( -25.60) >DroEre_CAF1 26964 92 + 1 ----------GCCCGCAUUAAGCCAUUAAAGCUAAUUAAACCCAUCCGCCCUGGGGGCCCAGGCUAACGCCAUCAAUCCACCCGUUUAAUACCCAUUCCCAG- ----------....((.((((....)))).))..(((((((......((((...))))...(((....)))............)))))))............- ( -18.50) >DroYak_CAF1 26050 103 + 1 AACAGCGAUGGCCCGCAUUAAGCCAUUAAAGCUAAUUAAAGCCAGCCGCCCUGGGCUCGCAGGCUAGCGCCAUCAGUCCGCCCAUUUAAUACCCAUUCCCAUA ......((((((..((....((((.((((......)))).((.((((......)))).)).)))).))))))))............................. ( -24.80) >consensus AACGGCGAUGGCCCGCAUUAAGCCAUUAAAGCUAAUUAAACCCAGCCGCCCUGGGG_CCCAGGCUAACGCCAUCAAUCCUCCCAUUUAAUGCCCGUUCCCAU_ ....(((.(((((.((.((((....)))).))........(((((.....)))))......))))).)))................................. (-13.08 = -15.32 + 2.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:45 2006