Locus 3322

Sequence ID 2L_DroMel_CAF1
Location 9,596,439 – 9,596,530
Length 91
Max. P 0.507734
window5272

overview

Window 2

Location 9,596,439 – 9,596,530
Length 91
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 81.88
Mean single sequence MFE -23.02
Consensus MFE -12.36
Energy contribution -13.50
Covariance contribution 1.14
Combinations/Pair 1.20
Mean z-score -2.23
Structure conservation index 0.54
SVM decision value -0.05
SVM RNA-class probability 0.507734
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9596439 91 + 22407834
AACAAAACUCCGCCAGGAUACUCC-AUCUAACCCACCUCCAGUUGCUAAUGGCUUUCUCGCCAGCUUAUCAGCUUAUUUUCAUCAG--CGACUG
........(((....)))......-..............((((((((..((((......))))(((....)))...........))--)))))) ( -20.10)
>DroSec_CAF1 6657 87 + 1
-----AACCCAGGCAGGAUACUCCAAUCUAGCCCACCUCCAGUUGCUAAUGGCUUUCUCGCCAGCUUAUCAGCAUAUUUUCAUCAG--CGACUG
-----......(((.((((......)))).)))......((((((((..((((......))))(((....)))...........))--)))))) ( -25.40)
>DroSim_CAF1 7033 87 + 1
-----AACCCAGGCAGGAUACUCCAAUCUAGCCCACCUCCAGUUGCUAAUGGCUUUCUCGCCAGCUUAUCAGCAUAUUUUCAUCAG--CGACUG
-----......(((.((((......)))).)))......((((((((..((((......))))(((....)))...........))--)))))) ( -25.40)
>DroEre_CAF1 6590 91 + 1
-GCAGAACUCAGGCAGGAUACUCCAAGCUGGCCCACCUCCAGUUGCUAAUGGCUUUCUCGCCAGCUUAUCAGCGUAUUUCCAUCAG--CCACUG
-..........(((.((.....))((((((((......(((........))).......))))))))..................)--)).... ( -23.02)
>DroYak_CAF1 6887 93 + 1
-AAGGAACUCUAGCAGGAUACUGCAAUCUAGCCCACCUCCAGUUGCUAAUGGCUUUCUCGCCAGCUUAUCAGCAUAGUUUCAUCAGAUCGACUG
-..((((((...((((....)))).................((((.(((((((......))))..))).))))..))))))............. ( -20.60)
>DroAna_CAF1 6525 85 + 1
--G--AGAACACGCGGGAUACAG---GACAUCCCCUGUCCGGCUGCUAAUGGUUUUCUCGCCAGCUUAUCAGCAUAUUUCCAUCGA--CCGCUG
--.--.......((((......(---((((.....))))).((((.(((((((......))))..))).)))).............--)))).. ( -23.60)
>consensus
_____AACUCAGGCAGGAUACUCCAAUCUAGCCCACCUCCAGUUGCUAAUGGCUUUCUCGCCAGCUUAUCAGCAUAUUUUCAUCAG__CGACUG
...........(((.((((......)))).)))......((((((....((((......))))(((....)))...............)))))) (-12.36 = -13.50 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:44 2006