Locus 3321

Sequence ID 2L_DroMel_CAF1
Location 9,594,757 – 9,594,865
Length 108
Max. P 0.586564
window5271

overview

Window 1

Location 9,594,757 – 9,594,865
Length 108
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 84.54
Mean single sequence MFE -20.20
Consensus MFE -15.04
Energy contribution -15.40
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -2.00
Structure conservation index 0.74
SVM decision value 0.11
SVM RNA-class probability 0.586564
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9594757 108 + 22407834
ACAGCAAACAAACUGCCACAAACUGUUUGAUUUGUCGCUCAGGACUAAUGAAACCAAACAUUAGCGAGCCCAGGACAAACGCCCCUUCCACUAAUCUCUCCCCCCCU-C
...((...(((((...........))))).((((((((((..(.((((((........)))))))))))....)))))).)).........................-. ( -17.80)
>DroSec_CAF1 5019 105 + 1
ACAGCAAACAAACUGCCACAAACUGUUUGAUUUGUCGCUCAGGACUAAUGAAACCAAACAUUAGCGAGCCCAGGACAAACGCCCCUUCCUCUAAUCUC---CCCCCU-C
...((...(((((...........))))).((((((((((..(.((((((........)))))))))))....)))))).))................---......-. ( -17.80)
>DroSim_CAF1 5426 104 + 1
ACAGCAAACAAACUGCCACAAACUGUUUGAUUUGUCGCUCAGGACUAAUGAAACCAAACAUUAGCGAGCCCAGGACAAACGCCCCUUCCUCUAAUCUA---C-CCCU-C
...((...(((((...........))))).((((((((((..(.((((((........)))))))))))....)))))).))................---.-....-. ( -17.80)
>DroEre_CAF1 5029 109 + 1
ACAGCAAACAAACUGCCACAAACUGUUUGAUUUGUCGCUCAGGACUAAUGAAACCAAACAUUAGCGAGCCCAGGACAAACGCCCCUUCCUCAAAUCCCCCGCUCCAUCC
..(((...(((((...........))))).((((((((((..(.((((((........)))))))))))....)))))).....................)))...... ( -18.80)
>DroYak_CAF1 5130 88 + 1
ACAGCAAACAAACUGCCACAAACUGUUUGAUUUGUCGCUCAGGACUAAUGAAACCAAACAUUAGCGUGCCCAGGACAAACGCCCCUUU---------------------
...((...(((((...........))))).((((((.((((.(.((((((........))))))).))...)))))))).))......--------------------- ( -17.30)
>DroAna_CAF1 4943 101 + 1
ACGGCAAACAAACUGCCACAAACUGUUUGAUUUGUCGCUCAGGACUAAUGAAACCAAACAUUAGCGAGCCCAGAGCAUCCUGCGCCACC--------CCUGCAGGAUCU
..(((((((((((...........))))).))))))((((.((.((((((........))))))....))..))))((((((((.....--------..)))))))).. ( -31.70)
>consensus
ACAGCAAACAAACUGCCACAAACUGUUUGAUUUGUCGCUCAGGACUAAUGAAACCAAACAUUAGCGAGCCCAGGACAAACGCCCCUUCCUCUAAUCUC___C_CCCU_C
...(((.......)))........(((((.((((..((((..(.((((((........))))))))))).)))).)))))............................. (-15.04 = -15.40 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:43 2006