Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,592,315 – 9,592,413 |
Length | 98 |
Max. P | 0.546943 |
Location | 9,592,315 – 9,592,413 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 82.54 |
Mean single sequence MFE | -22.82 |
Consensus MFE | -14.20 |
Energy contribution | -14.73 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.06 |
Mean z-score | -1.93 |
Structure conservation index | 0.62 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.546943 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9592315 98 + 22407834 AAGGCAAACACAGUCGACUAAGUAUACGCAUUGUGCCUUAUUCCCUUUUGGGACAGAUAUA----UAUGUAUGUAUAU--CCCACAAAAAGGUGGGCAAGUCAA ..(((.......)))((((..(((((..(((((((.((...((((....)))).)).))))----.)))..)))))..--(((((......)))))..)))).. ( -26.40) >DroVir_CAF1 3295 76 + 1 UGAGCAAACA--UU----UAACUAUACGCAUUGUGCCGUAUUCUCUUUUGGGACAA--------------------AG--GCCACAAAAAGGUGGGCAAGUCAA .........(--((----(..((((.....(((((((....((((....))))...--------------------.)--).)))))....))))..))))... ( -14.70) >DroSec_CAF1 2628 92 + 1 AAGGCAAACACAGUCGACUAAGUAUACGCAUUGUGCCUUAUUCCCUUUUGGGACAGAUAU----------AUGUAUAU--CCCACAAAAAGGUGGGCAAGUCAA ..(((.......)))((((..((((((((.....)).....((((....)))).......----------..))))))--(((((......)))))..)))).. ( -24.10) >DroSim_CAF1 2642 92 + 1 AAGGCAAACACAGUCGACUAAGUAUACGCAUUGUGCCUUAUUCCCUUUUGGGACAGAUAU----------AUGUAUAU--CCCACAAAAAGGUGGGCAAGUCAA ..(((.......)))((((..((((((((.....)).....((((....)))).......----------..))))))--(((((......)))))..)))).. ( -24.10) >DroEre_CAF1 2588 94 + 1 AAGGCAAA--CAGUCGACUAAGUAUACGCAUUGUGCCUUAUUCCCUUUUGGGACAGAUAU--------AUACAUAUAUAGCCCACAAAAAGGUGGACAAGUCAA ..(((...--..)))((((..(((((.((.....)).....((((....))))......)--------)))).......(.((((......)))).).)))).. ( -21.30) >DroYak_CAF1 2641 99 + 1 AAGGCAAA--CAGUCGACUAAGUAUACGCAUUGUGCCUUAUUCCCUUUUGGGACAGAUAUACGAGUAUAUACAUAUAUA--CCACA-AAAGGUGGGCAAGUCAA ..(((...--..)))((((..(((((..(.(((((..((..((((....))))..))..))))))..))))).......--((((.-....))))...)))).. ( -26.30) >consensus AAGGCAAACACAGUCGACUAAGUAUACGCAUUGUGCCUUAUUCCCUUUUGGGACAGAUAU__________AUGUAUAU__CCCACAAAAAGGUGGGCAAGUCAA ((((((......((...........))......))))))..((((....))))............................((((......))))......... (-14.20 = -14.73 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:42 2006