Locus 3319

Sequence ID 2L_DroMel_CAF1
Location 9,589,732 – 9,589,838
Length 106
Max. P 0.835685
window5269

overview

Window 9

Location 9,589,732 – 9,589,838
Length 106
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 80.66
Mean single sequence MFE -39.08
Consensus MFE -23.51
Energy contribution -25.23
Covariance contribution 1.72
Combinations/Pair 1.08
Mean z-score -2.29
Structure conservation index 0.60
SVM decision value 0.73
SVM RNA-class probability 0.835685
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9589732 106 - 22407834
CGUAUUCCUCUGAAUGCGUAGAUUGUCUUGUUCCCAAAGCUCUGCAUAGUAUCUCCUUGGAUUCUGCCCAAGGAGAGCUCCACCACAGGAUCAUCUCCGAUAAAAG--
.((((((....))))))(.((((.(((((((......(((..(((...)))(((((((((.......)))))))))))).....))))))).)))).)........-- ( -31.30)
>DroPse_CAF1 7040 108 - 1
GGUAUGCCGCGGAAGGCGUAGAUCGUCUUUCCCUGGAAACUCUGCAUCGUAGAGCCCUGAACGCGCCCCAGGGAGAGCUCUACCACAGGCGGAUCUUGGGCGAAGGAG
..((((((......)))))).....((((((((((....)(((((...(((((((((((.........))))....))))))).....)))))....))).)))))). ( -38.50)
>DroSec_CAF1 50 106 - 1
CGUAUUCCUCUGAAUGCGUAGAUGGUCUUGUUCCUAAAGCUCUGCAUGGUAUCUCCUUGGAUUCUGCCCAAGGAGAGCUCCACCACAGGAUCAUCUCCGAUGAAAG--
.((((((....))))))(.((((((((((((.......((...)).(((..(((((((((.......)))))))))...)))..)))))))))))).)........-- ( -39.60)
>DroSim_CAF1 50 106 - 1
CGUAUUCCUCGGAAUGCGUAGAUGGUCUUGUUCCUAAAGCUCUGCAUGGUAUCUCCUUGGAUUCUGCCCAAGGAGAGCUCCACCACAGGAUCAUCUCCGAUGAAAG--
.((((((....))))))(.((((((((((((.......((...)).(((..(((((((((.......)))))))))...)))..)))))))))))).)........-- ( -41.70)
>DroEre_CAF1 44 106 - 1
CGCAUGCCUCUGAAGGCGUAGAUGGUCUUGUUCCGGAAGCUCGGCAUCGUAGCUCCUUGGACUCUGCCCAAGGAGAGCUCCACCACAGGAUCAUCUCCGACAAAAG--
...((((((....))))))((((((((((((...(((.((((.((......))(((((((.......))))))))))))))...))))))))))))..........-- ( -43.80)
>DroPer_CAF1 6939 108 - 1
GGUAUGCCGCGGAAGGCGUAGAUCGUCUUUCCCUGGAAGCUCUGCAUCGUAGAGCCCUGAACGCGCCCCAGGGAGAGCUCUACCACAGGCGGAUCUUGGGCGAAGGAG
..((((((......)))))).....(((((((((..(((.(((((...(((((((((((.........))))....))))))).....))))).)))))).)))))). ( -39.60)
>consensus
CGUAUGCCUCGGAAGGCGUAGAUGGUCUUGUUCCGAAAGCUCUGCAUCGUAGCUCCUUGGACUCUGCCCAAGGAGAGCUCCACCACAGGAUCAUCUCCGACGAAAG__
................((.((((((((((((......((((((...........((((((.......)))))))))))).....)))))))))))).))......... (-23.51 = -25.23 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:41 2006