| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,589,414 – 9,589,524 |
| Length | 110 |
| Max. P | 0.632635 |
| Location | 9,589,414 – 9,589,524 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.49 |
| Mean single sequence MFE | -27.98 |
| Consensus MFE | -18.63 |
| Energy contribution | -19.86 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.632635 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9589414 110 + 22407834 -----UACCACCGGAGGAAAUAGAAACCGUGCGAAACCUGCAGUCACGGUUCCGCUGAAAUACUCGUAACAUGCGGGUGCGCACCACCAAAAAGGGGGAAAAACUAAUAAAAA-----UA -----..((.((...((.........))(((((..(((((((((.(((((...........)).))).)).))))))).))))).........))))................-----.. ( -27.60) >DroSec_CAF1 17297 108 + 1 -----UACCACCCGAGGAAAUAGAAACCGUGCGAAACCUGCAGUCACGGUUCCGCUGAAAUACUCGUAACAUGCGGGUGCGCACCACCAAAA-GG-GGAAAAACUAAUAAAAC-----UA -----.....(((..((.........))(((((..(((((((((.(((((...........)).))).)).))))))).)))))........-))-)................-----.. ( -28.10) >DroSim_CAF1 16967 109 + 1 -----UACCACCCGAGAAAAUAGAAACCGUGCGAAACCUGCAGUCACGGUUCCGCUGAAACACUCGUAACAUGCGGGUGCGCACCACCAAAA-GGGGGAAAAACUAAUAAAAC-----UA -----.....(((...............(((((..(((((((((.(((((((....)))....)))).)).))))))).)))))..((....-)))))...............-----.. ( -28.30) >DroEre_CAF1 17317 114 + 1 -----UACCACCCGAGGAAAUAGAAACCGUGCGAAACCUGCAGUCACGGUUUCGCUGAGAUACUCGCAACAUGCGGGUGCGCACCACCAAAAAGG-GGAAAAACAAAUAAAAACUUGGUA -----..((......)).....((((((((((..........).)))))))))((..((.(((((((.....)))))))....((.((.....))-))...............))..)). ( -32.90) >DroYak_CAF1 17925 108 + 1 AGCACCACCACCCUAAGAAUUAGAAACCGUGCGAAACCUGCAG------UUUCGCUGAAAAACUCGUAACAUGCGGGUGCGCACCACCGAAAAGG-GGAAAAACUAAUAAAAU-----UA ..................(((((...(((((((..((((((((------((.((..........)).))).))))))).)))))..((.....))-)).....))))).....-----.. ( -24.60) >DroAna_CAF1 57607 112 + 1 UCGCGUAUAACCCAAAGAACCGAAAACCGUGCGAAACCUGCAGUCACGCUACUGCCGCACCACCCGUAGCAUGCGGGCGCGCACCACCGAAAAGG-G--AAAACUAAUAACAU-----UU ..((((......................(((((......(((((......))))))))))..(((((.....))))).))))....((.....))-.--..............-----.. ( -26.40) >consensus _____UACCACCCGAGGAAAUAGAAACCGUGCGAAACCUGCAGUCACGGUUCCGCUGAAAUACUCGUAACAUGCGGGUGCGCACCACCAAAAAGG_GGAAAAACUAAUAAAAA_____UA ..........................(((((((...((((((((.((((..............)))).)).))))))..)))))..((.....)).))...................... (-18.63 = -19.86 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:40 2006